Experimental Biomolecular Physics Journal Club

Experimental Biomolecular Physics

Interesting Publications

The articles below have been discussed in the Experimental Biomolecular Physics Journal Club and can be downloaded from Y:\Articles\Exp.Biomol.Phys._JournalClub\ on rimfaxe (our local server) or here for local users.

PaperDisc. dateChairman
124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics. Orsolya K. Wade, Johannes B. Woehrstein, Philipp C. Nickels, Sebastian Strauss, Florian Stehr, Johannes Stein, Florian Schueder, Maximilian T. Strauss, Mahipal Ganji, Joerg Schnitzbauer, Heinrich Grabmayr, Peng Yin, Petra Schwille, and Ralf Jungmann. Nano Lett.2019, 19, 4, 2641-2646, DOI: 10.1021/acs.nanolett.9b00508 Jun-27-2019 Per
A Fiber-Coupled Stimulated Emission Depletion Microscope for Bend-Insensitive Through-Fiber Imaging. Brendan M. Heffernan, Stephanie A. Meyer, Diego Restrepo, Mark E. Siemens, Emily A. Gibson & Juliet T. Gopinath. Scientific Reports (2019) 9:11137 https://doi.org/10.1038/s41598-019-47319-w. Oct-08-2020 Elin
A fluorogenic probe for cell surface phosphatidylserine using an intramolecular indicator displacement sensing mechanism. Vincent E Zwicker, Bruno Oliveira, Jia Hao Yeo, Stuart Fraser, Goncalo Bernardes, Elizabeth J. New, and Katrina Jolliffe. Angew. Chem. Int. Ed. 10.1002/anie.201812489. Nov-29-2018 Saptaswa
A fluorescent membrane tension probe. Adai Colom, Emmanuel Derivery, Saeideh Soleimanpour, Caterina Tomba, Marta Dal Molin, Naomi Sakai, Marcos González-Gaitán, Stefan Matile and Aurélien Roux. Nature Chemistry Vol 10 November 2018 1118-1125. Jan-17-2019 Brant
A general approach to break the concentration barrier in single-molecule imaging. Anna B Loveland, Satoshi Habuchi, Johannes C Walter & Antoine M van Oijen. Nature methods 2012. Sep-20-2012
A general method to improve fluorophores for live-cell and single-molecule microscopy. Jonathan B Grimm, Brian P English, Jiji Chen, Joel P Slaughter, Zhengjian Zhang, Andrey Revyakin, Ronak Patel, John J Macklin, Davide Normanno, Robert H Singer, Timothe Lionnet & Luke D Lavis. Nature methods Vol.12 No.3: 244-253. Apr-16-2015 Vova
A guide to super-resolution fluorescence microscopy Lothar Schermelleh, Rainer Heintzmann, and Heinrich Leonhardt. J. Cell Biol. Vol. 190 No. 2: 165-175. Jan-26-2012 Daniel
A molecular sensor to quantify the localization of proteins, DNA and nanoparticles in cells. Laura I. FitzGerald, Luigi Aurelio, Moore Chen, Daniel Yuen, Joshua J. Rennick, Bim Graham & Angus P. R. Johnston. Nature Communications (2020) 11:4482. Sep-17-2020 Brant
A nanomechanical mass sensor with yoctogram resolution. J. Chaste, A. Eichler, J. Moser, G. Ceballos, R. Rurali and A. Bachtold. Nature Nanotechnology 2012 published online: 1 April 2012, DOI: 10.1038/NNANO.2012.42, 4 pages. Apr-19-2012 Stefan
A self-operating broadband spectrometer on a droplet. P. Malara, A. Giorgini, S. Avino, V. Di Sarno, R. Aiello, P. Maddaloni, P. De Natale & G. Gagliard. Nature communications (2020) 11:2263 https://doi.org/10.1038/s41467-020-16206-8 Sep-22-2022 Alessandro
A simple empirical algorithm for optimising depletion power and resolution for dye and system specific STED imaging. Christian A. Combs , Dan L. Sackett & Jay R. Knutson. Journal of Microscopy, Vol. 274, Issue 3 2019, pp. 168-176. Jun-20-2019 Jan
A thermodynamic definition of protein domains. Lauren L. Porter and George D. Rose. PNAS doi/10.1073. Jun-14-2012 Per
A wavelength-induced frequency filtering method for fluorescent nanosensors in vivo. Volodymyr B. Koman, Naveed A. Bakh, Xiaojia Jin, Freddy T. Nguyen, Manki Son, Daichi Kozawa, Michael A. Lee, Gili Bisker, Juyao Dong and Michael S. Strano. Nature Nanotechnology Vol 17 June 2022 643-652. Jan-19-2023 Abhilash
ACRONYM: Acronym CReatiON for You and Me. B. A. Cook. https://www.cfa.harvard.edu/~gpetitpas/Links/Astroacro.html Apr-11-2019 Chinmaya
Actin filaments attachment at the plasma membrane in live cells cause the formation of ordered lipid domains. Jelena Dinic, Parham Ashrafzadeh, Ingela Parmryd. Biochimica et Biophysica Acta 1828 (2013) 1102-1111. Apr-15-2016 Stefan
Adaptive optics for fluorescence correlation spectroscopy. Charles-Edouard Leroux, Irne Wang, Jacques Derouard, and Antoine Delon. Optics Express Vol. 19, No. 27, 26839-26849. Mar-08-2012 Per
Aggregation Distributions on Cells Determined by Photobleaching Image Correlation Spectroscopy. Giuseppe D. Ciccotosto, Noga Kozer, Timothy T. Y. Chow, James W. M. Chon, and Andrew H. A. Clayton. Biophysical Journal Volume 104 March 2013 1056-1064. Mar-21-2013 Per
Aggregation and disaggregation of anionic aluminum phthalocyanines in cationic pre-micelle and micelle media: A fluorescence study.Raquel F. Correia, Suzana M. Andrade, M. Isabel Viseu. Journal of Photochemistry and Photobiology A: Chemistry 235 (2012) 21-28. Apr-26-2012 Vova
AMPK regulates NADPH homeostasis to promote tumour cell survival during energy stress. Sang-Min Jeon, Navdeep S. Chandel & Nissim Hay. Nature 2012 Vol 485 661-667. Jun-07-2012 Thiemo
Amyloidogenic Nanoplaques in Blood Serum of Patients with Alzheimer's Disease Revealed by Time-Resolved Thioflavin T Fluorescence Intensity Fluctuation Analysis. Tiiman A, Jelić V, Jarvet J, Jremo P, Bogdanović N, Rigler R, Terenius L, Grslund A, Vukojević V. Mar-24-2020 Jerker
An alternative framework for fluorescence correlation spectroscopy. Sina Jazani, Ioannis Sgouralis, Omer M. Shafraz, Marcia Levitus, Sanjeevi Sivasankar & Steve Press. Nature Communications (2019) 10:3662. Nov-14-2019 Brant
An alternative way to use the triplet energy of fluorescent dyes in organic light-emitting devices via an external iodide. Xing Xing, Taiju Tsuboi, Yosuke Nakai, Fei Wang, Boyuan Qi, Zhijian Chen, Bo Qu, Lixin Xiao, Qihuang Gong. Organic Electronics 13 (2012) 195-198. Feb-22-2012 Thiemo
An FCS Study of Unfolding and Refolding of CPM-Labeled Human Serum Albumin: Role of Ionic Liquid. Dibyendu Kumar Sasmal, Tridib Mondal, Supratik Sen Mojumdar, Aparajita Choudhury, Rajat Banerjee, and Kankan Bhattacharyya. J. Phys. Chem. B 2011, 115, 13075-13083. Feb-22-2012 Thiemo
An ultra wideband-high spatial resolution-compact electric field sensor based on Lab-on-Fiber technology. V. Calero, M.-A. Suarez, R. Salut, F. Baida, A. Caspar, F. Behague, N. Courjal, L Galtier, L. Gillette, L. Duvillaret, G. Gaborit & M.-P. Bernal. SciRep (2019) 9:8058 https://doi.org/10.1038/s41598-019-446-y Oct-15-2020 Halvor
Analyses of Intravesicular Exosomal Proteins Using a Nano-Plasmonic System. Jongmin Park, Hyungsoon Im, Seonki Hong, Cesar M. Castro, Ralph Weissleder, and Hakho Lee. ACS Photonics 2018, 5, 487-494. May-31-2018 Katia
Analysis of sparse molecular distributions in fibrous arrangements based on the distance to the first neighbor in single molecule localization microscopy. Alan M. Szalai, Luca F. Lopez, a Miguel ngel Morales-Vsquez, Fernando D. Stefani and Pedro F. Aramenda. Nanoscale, 2020, 12, 9495-9506. Jun-25-2020 Jerker
Anomalous subdiffusive measurements by fluorescence correlations spectroscopy and simulations of translational diffusive behavior in live cells. Gerd Baumann, Masataka Kinjo, and Zeno Fldes-Papp. Journal of Biological Methods 2014, Vol. 1, 1-9., DOI: 10.14440/jbm.2014.17. Apr-30-2015 Per
Annular Protofibrils Are a Structurally and Functionally Distinct Type of Amyloid Oligomer. Rakez Kayed, Anna Pensalfini, Larry Margol, Yuri Sokolov, Floyd Sarsoz, Elizabeth Head, James Hall, and Charles Glabe. The Journal of Biological Chemistry 2009 VOL. 284, no. 7, pp. 4230-4237. Apr-19-2012 Stefan
Analyzing the Homeostasis of Signaling Proteins by a Combination of Western Blot and Fluorescence Correlation Spectroscopy. Yi-Da Chung, Michael D. Sinzinger, Petra Bovee-Geurts, Marina Krause, Sip Dinkla, Irma Joosten, Werner J. Koopman, Merel J. W. Adjobo-Hermans, and Roland Brock. Biophysical Journal Volume 101 December 2011: 2807-2815 Jan-12-2012 Vova
Aptamers as potential tools for super-resolution microscopy. Felipe Opazo, Matthew Levy, Michelle Byrom, Christina Schfer, Claudia Geisler, Teja W Groemer, Andrew D Ellington & Silvio O Rizzoli. nature methods Vol.9 No.10 October 2012:938-939. Oct-25-2012 Jerker
Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 1. Multidetector and Sub-Binning Approach. Farshad Abdollah-Nia, Martin P. Gelfand, and Alan Van Orden. J. Phys. Chem. B 2017, 121, 2373-2387. May-05-2017 Stefan
Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 2. Multidetector and Sub-Binning Approach. Farshad Abdollah-Nia, Martin P. Gelfand, and Alan Van Orden. J. Phys. Chem. B 2017, 121, 2388-2399. May-05-2017 Stefan
ATP-induced helicase slippage reveals highly coordinated subunits. Bo Sun, Daniel S. Johnson, Gayatri Patel, Benjamin Y. Smith, Manjula Pandey, Smita S. Patel & Michelle D. Wang. Nature Vol 478 2011: 132-136. Dec-08-2011 Stefan
Atto Thio 12 as a promising dye for photo-CIDNP. Alexander Sobol, Felix Torres, Anatol Aicher, Alois Renn, and Roland Rieka. J. Chem. Phys. 151, 234201 (2019); doi: 10.1063/1.5128575. Jan-09-2020 Jerker
Background-free imaging of chemical bonds by a simple and robust frequency-modulated stimulated Raman scattering microscopy. Hanqing Xiong, Naixin Qian, Zhilun Zhao, Lingyan Shi, Yupeng Miao, and Wei Min. Optics Express 15663 Vol. 28, No. 10, 11 May 2020. Jun-03-2021 Haichun
Background suppression in fluorescence nanoscopy with stimulated emission double depletion. Peng Gao, Benedikt Prunsche, Lu Zhou, Karin Nienhaus and G. Ulrich Nienhaus. Nature Photonics VOL 11 March 2017, p: 163-170. Mar-31-2017 Elin
Bayesian localization microscopy reveals nanoscale podosome dynamics. Susan Cox, Edward Rosten, James Monypenny, Tijana Jovanovic-Talisman, Dylan T Burnette, Jennifer Lippincott-Schwartz, Gareth E Jones1 & Rainer Heintzmann. Nature methods Vol.9 no.2 February 2012: 195-200. Feb-09-2012 Jerker
Biological mechanisms, one molecule at a time Ignacio Tinoco, Jr and Ruben L. Gonzalez, Jr. Genes Dev. 2011 25: 1205-1231 Jan-19-2012 Jonas
Biological measurement beyond the quantum limit. Michael A. Taylor, Jiri Janousek, Vincent Daria, Joachim Knittel, Boris Hage, Hans-A. Bachor. Nature Photonics Vol 7 March 2013, 229-233. DOI: 10.1038/NPHOTON.2012.346 Jan-30-2020 Niklas
Biological Imaging with Medium-Sensitive Bichromatic Flexible Fluorescent Dyes. Yang Cao, Xiaozhu Wang, Xiaolei Shi, Susanne M. Clee, Patrick L. McGeer, Michael O. Wolf, and Chris Orvig. Angew. Chem. Int. Ed. 2017, 56, 15603-15606 Dec-01-2017 Saptaswa
Biomechanics and biophysics of cancer cells. Subra Suresh. Acta Biomater. 2007 July ; 3(4): 413-438. Jan-26-2012 Daniel
Broken detailed balance at mesoscopic scales in active biological systems. Christopher Battle, Chase P. Broedersz, Nikta Fakhri, Veikko F. Geyer, Jonathon Howard, Christoph F. Schmidt, Fred C. MacKintosh. Science 29 April 2016, Vol 352 Issue 6285, 604-607. May-20-2016 Lei
Cadmium-Free Quantum Dots as Fluorescent Labels for Exosomes. Garima Dobhal, Deanna Ayupova, Geoffry Laufersky, Zeineb Ayed, Thomas Nann and Renee V. Goreham. Sensors 2018, 18, 3308; doi:10.3390/s18103308. Nov-29-2018 Saptaswa
Cell membrane modulation as adjuvant in cancer therapy. Sara Zalba, Timo L.M. ten Hagen. Cancer Treatment Reviews 52 (2017), 48-57. Apr-21-2017 Saptaswa
Cell-sized asymmetric lipid vesicles facilitate the investigation of asymmetric membranes. Koki Kamiya, Ryuji Kawano, Toshihisa Osaki, Kazunari Akiyoshi and Shoji Takeuchi. Nature Chemistry Vol 8 September 201, 881-890. Apr-21-2017 Saptaswa
Cell-surface sensors for real-time probing of cellular environments. Weian Zhao1, Sebastian Schafer1, Jonghoon Choi, Yvonne J. Yamanaka, Maria L. Lombardi, Suman Bose, Alicia L. Carlson, Joseph A. Phillips, Weisuong Teo, Ilia A. Droujinine, Cheryl H. Cui1, Rakesh K. Jain, Jan Lammerding, J. Christopher Love, Charles P. Lin, Debanjan Sarkar, Rohit Karnik and Jeffrey M. Karp. Nature nanotechnology vol 6 August 2011, 524-531. Mar-22-2012 Yang
Central dogma at the single-molecule level in living cells. Gene-Wei Li & X. Sunney Xie. Nature Vol. 475 2011: 308-315. Dec-01-2011
Challenges in long-term imaging and quantification of single-cell dynamics. Stavroula Skylaki, Oliver Hilsenbeck & Timm Schroeder. Nature biotechnology, volume 34 number 11 2016: 1137-1144. Nov-11-2016 Joachim
Characterization of Dark Quencher Chromophores as Nonfluorescent Acceptors for Single-Molecule FRET. Ludovic Le Reste, Johannes Hohlbein, Kristofer Gryte, and Achillefs N. Kapanidis. Biophysical Journal Volume 102 May 2012 2658-2668. Jun-07-2012 Thiemo
Characterization of the Triplet State of Hybridization-Sensitive DNA Probe by Using Fluorescence Correlation Spectroscopy. Hyo-Sup Shin, Akimitsu Okamoto, Yasushi Sako, Sok Won Kim, Soo Yong Kim, and Chan-Gi Pack. J. Phys. Chem. A 2013, 117, 27-33. Feb-14-2013 Jerker
Chemical Photocatalysis with Rhodamine 6G: Investigation of Photoreduction by Simultaneous Fluorescence Correlation Spectroscopy and Fluorescence Lifetime Measurements. Josef M. Haimerl, Indrajit Ghosh, Burkhard Konig, John M. Lupton, and Jan Vogelsang. J. Phys. Chem. B XXXX, XXX, XXX-XXX. Nov-29-2018 Saptaswa
Chip-based wide field-of-view nanoscopy. Robin Diekmann, Øystein I. Helle, Cristina I. Øie, Peter McCourt, Thomas R. Huser, Mark Schüttpelz & Balpreet S. Ahluwalia. Nature Photonics volume 11, pages 322-328 (2017). Nov-19-2020 Katia
Circular scanning fluorescence correlation spectroscopy on membranes. Zdenek Petrasek, Susan Derenko and Petra Schwille. Optics express December 2011 Vol. 19, No. 25: 25006-21. Jan-19-2012 Jonas
Circularly polarised luminescence laser scanning confocal microscopy to study live cell chiral molecular interactions. Patrycja Stachelek, Lewis MacKenzie, David Parker & Robert Pal. Nature communications (2022) 13:553 https://doi.org/10.1038/s41467-022-28220-z. Apr-14-2022 Niusha
Clinical Measurement of von Willebrand Factor by Fluorescence Correlation Spectroscopy. Richard Torres, Jonathan R. Genzen, and Michael J. Levene1. Clinical Chemistry 58:6 1010-1018 (2012). Sep-20-2012 Evangelos
Combining the best of two worlds: Stimulated Raman excited fluorescence. Hanqing Xiong and Wei Min. J. Chem. Phys. 153, 210901 (2020); doi: 10.1063/5.0030204. Apr-1-2021 Jerker
Compressive three-dimensional super-resolution microscopy with speckle-saturated fluorescence excitation. M. Pascucci, S. Ganesan, A. Tripathi, O. Katz, V. Emiliani & M. Guillon. Nature communications (2019)10:1327 https://doi.org/10.1038/s41467-019-09297-5 Apr-04-2019 Joachim
Computer Prediction of pKa Values in Small Molecules and Proteins. Claudio D. Navo and Gonzalo Jiménez-Osés. ACS Med. Chem. Lett. 2021. Nov-25-2021 Per
Coherent-hybrid STED: high contrast sub- diffraction imaging using a bi-vortex depletion beam. António Pereira, Mafalda Sousa, Ana C. Almeida, Luísa T. Ferreira, Ana Rita Costa, Marco Novais-Cruz, Cristina Ferrás, Mónica Mendes Sousa, Paula Sampaio, Michael Belsley, and Helder Maiato. Optics Express Vol. 27, No. 6, 18 Mar 2019, 8092-8111. Jun-20-2019 Jan
Confocal-based fluorescence fluctuation spectroscopy with a SPAD array detector. Eli Slenders, Marco Castello, Mauro Buttafava, Federica Villa, Alberto Tosi, Luca Lanzanò, Sami Valtteri Koho and Giuseppe Vicidomini. Light: Science & Applications (2021)10:31. Feb-02-2021 Joachim
Consequences of membrane topography. Ingela Parmryd and Bjrn nfelt. FEBS Journal 280 (2013) 2775-2784. Apr-25-2014 Stefan
Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy. Jan Vogelsang, Thorben Cordes, Carsten Forthmann, Christian Steinhauer, and Philip Tinnefeld. PNAS May 19, 2009 vol. 106 no. 20 8107-8112. May-24-2012 Daniel
Corner states of light in photonic waveguides. Ashraf El Hassan, Flore K. Kunst, Alexander Moritz, Guillermo Andler, Emil J. Bergholtz and Mohamed Bourennane. Nature Photonics Vol 13 October 2019 697-700. www.nature.com/naturephotonics. Dec-17-2020 Ashraf
Correcting for Spectral Cross-Talk in Dual-Color Fluorescence Cross-Correlation Spectroscopy. Kirsten Bacia, Zdene Petrasek, and Petra Schwille. ChemPhysChem 2012, 13, 1221-1231. May-10-2012 Jonas
Correction of dichroic mirror-induced PSF distortion in STED microscopy. Yanghui Li, Hui Zhou, Xiaoyu Liu, Chengliang Xia & Le Wang. Journal of Modern Optics, 2018 VOL. 65, NO. 12, 1424-1430. May-24-2018 Niusha
Correlating Calcium Binding, Frster Resonance Energy Transfer, and Conformational Change in the Biosensor TN-XXL. Anselm Geiger, Luigi Russo, Thomas Gensch, Thomas Thestrup, Stefan Becker, Karl-Peter Hopfner, Christian Griesinger, Gregor Witte, and Oliver Griesbeck. Biophysical Journal Volume 102 May 2012 2401-2410. Jun-07-2012 Thiemo
Correlational Analysis of Proteins and Nonmetallic Nanoparticles in a Deep-Nulling Microscope. Michael Hilbert, Hendrik Hippchen, Axel Wehling, and Peter J. Walla. J. Phys. Chem. B 2005, 109, 18162-18170. Apr-19-2012 Stefan
Correlation-Matrix Analysis of Two-Color Coincidence Events in Single-Molecule Fluorescence Experiments. Idir Yahiatene, Sren Doose, Thomas Huser, and Markus Sauer. 2 American Chemical Society 2729 dx.doi.org/10.1021/ac2030283 Anal. Chem. 2012, 84, 2729-2736 May-10-2012 Jonas
Correlative nanomechanical profiling with super-resolution F-actin imaging reveals novel insights into mechanisms of cisplatin resistance in ovarian cancer cells. Shivani Sharma, Chintda Santiskulvong, Laurent A. Bentolila, JianYu Rao, Oliver Dorigo, James K. Gimzewski. Nanomedicine: Nanotechnology, Biology, and Medicine xx (2011): xxx-xxx. Jan-26-2012 Daniel
Correlative two-color two-photon (2C2P) excitation STED microscopy. Christoph Polzer, Stefan Ness, Mojtaba Mohseni, Thomas Kellerer, Markus Hilleringmann, Joachim Rädler, and Thomas Hellerer. Biomedical Optics Express Vol. 10, No. 9 /1 September 2019, p 4516. Oct-01-2020 Chinmaya
Covalent Ras Dimerization on Membrane Surfaces through Photosensitized Oxidation. Jean K. Chung, Young Kwang Lee, Hiu Yue Monatrice Lam, and Jay T. Groves. J. Am. Chem. Soc. 2016, 138, 1800-1803. Apr-07-2018 Brant
Current technologies for HER2 testing in breast cancer. C.B. Moelans, R.A. de Weger, E. Van der Wall, P.J. van Diest. Critical Reviews in Oncology/Hematology 80 (2011): 380-392. Jan-19-2012 Jonas
Creating Supported Plasma Membrane Bilayers Using Acoustic Pressure. Erdinc Sezgin, Dario Carugo, Ilya Levental, Eleanor Stride and Christian Eggeling. Membranes 2020, 10(2), 30; https://doi.org/10.3390/membranes10020030 Apr-16-2020 Chinmaya
Cyanine fluorophore derivatives with enhanced photostability. Roger B Altman, Daniel S Terry, Zhou Zhou, Qinsi Zheng, Peter Geggier, Rachel A Kolster, Yongfang Zhao, Jonathan A Javitch, J David Warren & Scott C Blanchard. Nature methods, Vol.9 No.1 January 2012, 68-73. Mar-29-2012 Evangelos
Defining the Basis of Cyanine Phototruncation Enables a New Approach to Single-Molecule Localization Microscopy. Siddharth S. Matikonda, Dominic A. Helmerich, Mara Meub, Gerti Beliu, Philip Kollmannsberger, Alexander Greer, Markus Sauer, and Martin J. Schnermann. ACS Cent. Sci. 2021, 7, 1144-1155. Sep-16-2021
Detection of Cancer-Cells in Prostate Tissue with Time-Resolved Fluorescence Spectroscopy. C.E. Gerich J. Opitz, M. Toma, M. Sergon, S. Fssel, R. Nanked, J. Fehre, M. Wirth, G. Baretton and J. Schreiber. Proc. of SPIE Vol. 7897: 78970R1-12. Jan-19-2012 Jonas
Detection of long-range electrostatic interactions between charged molecules by means of fluorescence correlation spectroscopy. Ilaria Nardecchia, Mathias Lechelon, Matteo Gori, Irene Donato, Jordane Preto, Elena Floriani, Sebastien Jaeger, Sebastien Mailfert, Didier Marguet, Pierre Ferrier, and Marco Pettini. Physical Review E 96, 022403:1-13 (2017). Nov-17-2017 Jerker
Determination of equilibrium and rate constants for complex formation by fluorescence correlation spectroscopy supplemented by dynamic light scattering and Taylor dispersion analysis. Xuzhu Zhang, Andrzej Poniewierski, Aldona Jelińska, Anna Zagoźdźon, Agnieszka Wisniewska, Sen Hou and Robert Holyst. Soft Matter, 2016, 12, 8186-8194. Nov-11-2016 Joachim
Determination of Equilibrium Constant and Relative Brightness in Fluorescence Correlation Spectroscopy by Considering Third-Order Correlations. Zhenqin Wu, Huimin Bi, Sichen Pan, Lingyi Meng, and Xin Sheng Zhao. J. Phys. Chem. B 2016, 120, 11674-11682. Feb-27-2017 Stefan
Determination of the mechanism of photo-ionization of NADH in aqueous solution on laser excitation at 355 nm. Lars Lindqvist, Barbara Czochralska and Ivan Grigorov. Chemical Physics Letters 1985 Volume 119, number 6, 494-498. Jan-24-2013 Thiemo
Development of new photon-counting detectors for single-molecule fluorescence microscopy. X. Michalet, R. A. Colyer, G. Scalia, A. Ingargiola, R. Lin, J. E. Millaud, S. Weiss, Oswald H. W. Siegmund, Anton S. Tremsin, John V. Vallerga, A. Cheng, M. Levi, D. Aharoni, K. Arisaka, F. Villa, F. Guerrieri, F. Panzeri, I. Rech, A. Gulinatti, F. Zappa, M. Ghioni and S. Cova. Phil. Trans. R. Soc. B 2013 368-390, 20120035, published online 24 December 2012 Feb-14-2013 Jerker
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP. Tim Grotjohann, Ilaria Testa, Marcel Leutenegger, Hannes Bock, Nicolai T. Urban, Flavie Lavoie-Cardinal, Katrin I. Willig, Christian Eggeling, Stefan Jakobs1, & Stefan W. Hell. Nature Vol 478 13 October 2011: 204-208. Jan-26-2012 Daniel
Diffraction-unlimited imaging: from pretty pictures to hard numbers. Wim Vandenberg, Marcel Leutenegger, Theo Lasser, Johan Hofkens, Peter Dedecker. Cell Tissue Res (2015) 360:151-178. Apr-30-2015 Per
Diffusion of Single-Pass Transmembrane Receptors: From the Plasma Membrane into Giant Liposomes. Remigiusz Worch, Zdenek Petrasek, Petra Schwille, Thomas Weidemann. J Membrane Biol DOI 10.1007/s00232-016-9936-8. Feb-27-2017 Stefan
Direct Detection of Radical Cations of NADH Analogues. Shunichi Fukuzumi, Osamu Inada, and Tomoyoshi Suenobu. J. Am. Chem. Soc. 2002, 124, 14538-14539. Jan-24-2013 Thiemo
Direct identification of ligand-receptor interactions on living cells and tissues. Andreas P Frei, Ock-Youm Jeon, Samuel Kilcher, Hansjoerg Moest, Lisa M Henning, Christian Jost, Andreas Plckthun, Jason Mercer, Ruedi Aebersold, Erick M Carreira & Bernd Wollscheid. nature biotechnology. Volume 30 Number 10 October 2012 997-1003. Oct-25-2012 Jerker
Direct Measurement of Association and Dissociation Rates of DNA Binding in Live Cells by Fluorescence Correlation Spectroscopy. Ariel Michelman-Ribeiro, Davide Mazza, Tilman Rosales, Timothy J. Stasevich, Hacene Boukari, Vikas Rishi, Charles Vinson, Jay R. Knutson, and James G. McNally. Biophysical Journal Volume 97 July 2009 337-346. Nov-29-2012 Stefan
Directional Fluorescence Spectral Narrowing in All-Polymer Microcavities Doped with CdSe/CdS Dot-in-Rod Nanocrystals. Giovanni Manfredi, Paola Lova, Francesco Di Stasio, Roman Krahne, and Davide Comoretto. ACS Photonics 2017, 4, 1761-1769 DOI: 10.1021/acsphotonics.7b00330 Jan-23-2020 Alessandro
Directionality of individual kinesin-5 Cin8 motors is modulated by loop 8, ionic strength and microtubule geometry. Adina Gerson-Gurwitz1, Christina Thiede, Natalia Movshovich, Vladimir Fridman, Maria Podolskaya, Tsafi Danieli, Stefan Lakamper, Dieter R Klopfenstein, Christoph F Schmidt, and Larisa Gheber. The EMBO Journal, Vol 30, No 24 2011: 4942-4954. Dec-15-2011 Sofia
DNA-Based Patterning of Tethered Membrane Patches. Laura D. Hughes and Steven G. Boxer. Langmuir 2013, 29, 12220-12227. May-20-2016 Lei
DNA flow injection through solid state nanopores. Thomas Auger. Master of Science Thesis at KTH 2013. Aug-15-2013 Jerker
DNA origami as biocompatible surface to match single-molecule and ensemble experiments. Andreas Gietl, Phil Holzmeister, Dina Grohmann and Philip Tinnefeld. Nucleic Acids Research, 2012, Vol. 40, No. 14: e110. Dec-08-2011 Stefan
Do Lipid Rafts Exist? Mitch Leslie. Science 2011 Vol. 334: 1046-7. Dec-08-2011 Stefan
Dual-Enhanced Raman Scattering-Based Characterization of StemCell Differentiation Using Graphene-Plasmonic Hybrid Nanoarray. Letao Yang, Jin-Ho Lee, Christopher Rathnam, Yannan Hou, Jeong-Woo Choi, and Ki-Bum Lee. Nano Lett.2019, 19, 8138-8148 Dec-5-2019 Maryam
Dual-modulation difference stimulated emission depletion microscopy to suppress the background signal. Wensheng Wang, Chuankang Li, Zhengyi Zhan, Zhimin Zhang, Yubing Han, Cuifang Kuang, and Xu Liu. Advanced Photonics 046001-1 Aug 2022 Vol. 4(4). Jan-19-2023 Abhilash
Dual-objective storm reveals three-dimensional filament organization in the actin cytoskeleton. Ke Xu, Hazen P Babcock & Xiaowei Zhuang. Nature methods vol.9 no.2 February 2012: 185. Feb-09-2012 Jerker
Dynamic upconversion multicolour editing enabled by molecule-assisted opto-electrochemical modulation. Yiming Wu, Jiahui Xu, Xian Qin, Jun Xu1, & Xiaogang Liu. Nature Communications (2021)12:2022. Oct-14-2012 Niusha
Early Amyloidogenic Oligomerization Studied through Fluorescence Lifetime Correlation Spectroscopy. Jose M. Paredes, Salvador Casares, Maria J. Ruedas-Rama, Elena Fernandez, Fabio Castello, Lorena Varela, and Angel Orte. Int. J. Mol. Sci. 2012, 13, 9400-9418. Nov-29-2012 Stefan
Efficient polarization splitter-rotator on thin-film lithium niobate. Xuanhao Wang, An Pan, Tingan Li, Cheng Zeng, and Jinsong Xia. Optics Express 38044. Vol. 29, No. 23 / 8 Nov 2021. Jun-23-2022 Tiangtong
Effect of pH on fluorescence quenching of organic dyes by graphene oxide. Suppachai Srisantitham, Mongkol Sukwattanasinitt, Sakulsuk Unarunotaia. Colloids and Surfaces A 550 (2018) 123-131. Jun-7-2018 Baris
Efficient Single-Molecule Fluorescence Resonance Energy Transfer Analysis by Site-Specific Dual-Labeling of Protein Using an Unnatural Amino Acid. Moon-Hyeong Seo, Tae-Sun Lee, Eunkyung Kim, Young Lag Cho, Hee-Sung Park, Tae-Young Yoon, and Hak-Sung Kim. Anal. Chem. 2011, 83: 8849-8854. Dec-15-2011 Sofia
Electrically driven directional motion of a four-wheeled molecule on a metal surface. Tibor Kudernac, Nopporn Ruangsupapichat, Manfred Parschau, Beatriz Macia1, Nathalie Katsonis, Syuzanna R. Harutyunyan, Karl-Heinz Ernst & Ben L. Feringa. Nature Vol 479 2011:208-211. Dec-15-2011 Sofia
Energy Transfer in Dye-Coupled Lanthanide-Doped Nanoparticles: From Design to Application. Juan Wang and Renren Deng. Chem. Asian J. 2018, accepted. May-24-2018 Niusha
Enrichment of molecular antenna triplets amplifies upconverting nanoparticle emission. David J. Garfield, Nicholas J. Borys, Samia M. Hamed, Nicole A. Torquato, Cheryl A. Tajon, Bining Tian, Brian Shevitski, Edward S. Barnard, Yung Doug Suh, Shaul Aloni, Jeffrey B. Neaton, Emory M. Chan, Bruce E. Cohen and P. James Schuck. Nature Photonics Vol 12 July 2018 402-407 www.nature.com/naturephotonics. Feb-06-2020 Lucía
Entropy-Driven Single Molecule Tug-of-War of DNA at Micro-Nanofluidic Interfaces. Jia-Wei Yeh, Alessandro Taloni, Yeng-Long Chen, and Chia-Fu Chou. Nano Lett. 2012, 12, 1597-1602. Mar-15-2012 Lei
Estimating the Hydrogen Bond Energy. Katharina Wendler, Jens Thar, Stefan Zahn, and Barbara Kirchner. J. Phys. Chem. A 2010, 114, 9529-9536. Mar-21-2013 Per
Evaluation and development of deep neural networks for image super-resolution in optical microscopy. Chang Qiao, Di Li, Yuting Guo, Chong Liu, Tao Jiang, Qionghai Dai and Dong Li. Nature Methods VOL 18 February 2021 194-202. Feb-02-2021 Joachim
Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging. Graham T Dempsey, Joshua C Vaughan, Kok Hao Chen, Mark Bates & Xiaowei Zhuang. Nature methods vol.8 no.12 2011 1027-1036+4p. Oct-19-2012 Daniel
Evaluating the Sensitivity of Lipid Headgroup-Bound Chromophores to Their Local Environment. Iwan Setiawan and G. J. Blanchard. J. Phys. Chem. B 2012. Jan-19-2012 Jonas
Evanescent single-molecule biosensing with quantum-limited precision. N. P. Mauranyapin, L. S. Madsen, M. A. Taylor, M. Waleed and W. P. Bowen. Quantum Sensing with Squeezed Light. B. J. Lawrie, P. D. Lett, A. M. Marino, and R. C. Pooser. ACS Photonics 2019, 6, 1307-1318. Aug-15-2019 Katia
Exonucleolytic degradation of high-density labeled DNA studied by fluorescence correlation spectroscopy. Nicky Ehrlich, Katrin Anhalt, Hauke Paulsen, Susanne Brakmann and Christian G. Hbnera. Analyst, 2012, 137, 1160, DOI: 10.1039/c2an15879e. Jan-10-2013 Stefan
Expansion Stimulated Emission Depletion Microscopy (ExSTED). Mengfei Gao, Riccardo Maraspini, Oliver Beutel, Amin Zehtabian, Britta Eickholt, Alf Honigmann, and Helge Ewers. ACS Nano 2018, 12, 4178-4185. DOI: 10.1021/acsnano.8b00776 Apr-11-2019 Chinmaya
Experimental space-division multiplexed polarization-entanglement distribution through 12 paths of a multicore fiber. Evelyn A. Ortega, Krishna Dovzhik, Jorge Fuenzalida, Sören Wengerowsky, Juan Carlos Alvarado-Zacarias, Rodrigo F. Shiozaki, Rodrigo Amezcua-Correa, Martin Bohmann, and Rupert Ursin. arXiv:2103.10791v2, 2021. Jun-02-2022 Hammad
Extended-Depth 3D Super-Resolution Imaging Using Probe-Refresh STORM. Danying Lin, Lauren A. Gagnon, Marco D. Howard, Aaron R. Halpern, and Joshua C. Vaughan. Biophysical Journal 114, 1980-1987, April 24, 2018. May-3-2018 Saptaswa
Extending single molecule fluorescence observation time by amplitude-modulated excitation. Lydia Kisley , Wei-Shun Chang , David Cooper, Andrea P Mansur and Christy F Landes. Methods Appl. Fluoresc. 1 (2013): 2-8. Nov-21-2013 Heike
Extracting decay curves of the correlated fluorescence photons measured in fluorescence correlation spectroscopy. Kunihiko Ishii, Tahei Tahara. Chemical Physics Letters 519-520 (2012): 130-133. Jan-12-2012 Vova
Factors Affecting the Quantification of Biomolecular Interactions by Fluorescence Cross-Correlation Spectroscopy. Yong Hwee Foo, Nikolaus Naredi-Rainer, Don C. Lamb, Sohail Ahmed, and Thorsten Wohland. Biophysical Journal Volume 102 March 2012 1174-1183. Mar-15-2012 Lei
Fast fit-free analysis of fluorescence lifetime imaging via deep learning. Jason T. Smith, Ruoyang Yao, Nattawut Sinsuebphon, Alena Rudkouskaya, Nathan Un, Joseph Mazurkiewicz, Margarida Barroso, Pingkun Yan, and Xavier Intes. PNAS November 26, 2019 vol. 116 no. 48 24019-24030. Apr-30-2020 Elin
Fast multicolor 3d imaging using aberration-corrected multifocus microscopy. Sara Abrahamsson, Jiji Chen, Bassam Hajj, Sjoerd Stallinga, Alexander Y Katsov, Jan Wisniewski, Gaku Mizuguchi, Pierre Soule, Florian Mueller, Claire Dugast Darzacq, Xavier Darzacq, Carl Wu, Cornelia I Bargmann, David A Agard, Maxime Dahan & Mats G L Gustafsson. Nature Methods 2013 vol.10 no.1, 60-65. Feb-14-2013 Jerker
Fast widefield scan provides tunable and uniform illumination optimizing super-resolution microscopy on large fields. Adrien Mau, Karoline Friedl, Christophe Leterrier, Nicolas Bourg & Sandrine Lévêque-Fort. Nature communications (2021)12:3077 https://doi.org/10.1038/s41467-021-23405-4. Jun-18-2021 Baris
Ferroelectric-assisted gold nanoparticles array for centimeter- scale highly reproducible SERS substrates. Xiaoyan Liu, Minoru Osada, Kenji Kitamura, Takahiro Nagata & Donghui Si. Sep-23-2021 Halvor
Filtered FCS: Species Auto- and Cross-Correlation Functions Highlight Binding and Dynamics in Biomolecules. Suren Felekyan, Stanislav Kalinin, Hugo Sanabria, Alessandro Valeri, and Claus A. M. Seidel. ChemPhysChem 2012, 13, 1036-1053. May-10-2012
Fluorescence correlation spectroscopy analysis for accurate determination of proportion of doubly labeled DNA in fluorescent DNA pool for quantitative biochemical assays. Sen Hou, Lili Sun, Stefan A. Wieczorek, Tomasz Kalwarczyk, Tomasz S. Kaminski, Robert Holyst. Biosensors and Bioelectronics 51 (2014) 8-15. Mar-03-2014 Per
Fluorescence-based characterization of non-fluorescent transient states of tryptophan - prospects for protein conformation and interaction studies. Heike Hevekerl, Johan Tornmalm & Jerker Widengren. Scientific Reports 6:35052, DOI: 10.1038/srep35052. Oct-10-2019 Niusha
Fluorescence Correlation Spectroscopy at Micromolar Concentrations without Optical Nanoconfinement. Ted A. Laurence, Sonny Ly, Feliza Bourguet, Nicholas O. Fischer, and Matthew A. Coleman. J. Phys. Chem. B 2014, 118, 9662-9667. Dec-11-2014 Johan
Fluorescence Correlation Spectroscopy Directly Monitors Coalescence During Nanoparticle Preparation. David Schaeffel, Roland Hinrich Staff, Hans-Juergen Butt, Katharina Landfester, Daniel Crespy, and Kaloian Koynov. Nano Lett. 2012, 12, 6012-6017. Nov-29-2012 Stefan
Fluorescence correlation methods for imaging cellular behavior of sphingolipid-interacting probes. Rachel Kraut, Nirmalya Bag and Thorsten Wohland. Methods in cell biology, vol 108: 395-427. Feb-22-2012 Thiemo
Fluorescence correlation spectroscopic examination of insulin and insulin-like growth factor 1 binding to live cells. Peter W. Winter, Jeffrey T. McPhee, Alan K. Van Orden, Deborah A. Roess, B. George Barisas. Biophysical Chemistry 159 2011: 303-310. Jan-19-2012 Jonas
Fluorescent correlation spectroscopy measurements with adaptive optics in the intercellular space of spheroids. Charles-Edouard Leroux, Sylvain Monnier, Irne Wang, Giovanni Cappello, and Antoine Delon. Biomedical optics express Vol. 5, No. 10 October 2014. DOI:10.1364/BOE.5.003730. May-27-2016 Vova
Fluorescence correlation spectroscopy with a total internal reflection fluorescence STED microscope (TIRF-STED-FCS). Marcel Leutenegger, Christian Ringemann, Theo Lasser, Stefan W. Hell and Christian Eggeling. 27 February 2012 / Vol. 20, No. 5 / Optics express 5243-5263. May-10-2012 Jonas
Fluorescence correlation spectroscopy with high-order and dual-color correlation to probe nonequilibrium steady states. Hong Qian and Elliot L. Elson. PNAS March 2, 2004 vol. 101 no. 9: 2828-2833. Nov-08-2012 Lei
Fluorescence Correlation Spectroscopy: Past, Present, Future. Elliot L. Elson. Biophysical Journal Volume 101 December 2011 2855-2870. Dec-01-2011 Evangelos
Fluorescence-Encoded Infrared Vibrational Spectroscopy with Single-Molecule Sensitivity. Lukas Whaley-Mayda, Abhirup Guha, Samuel B. Penwell, and Andrei Tokmakoff. J. Am. Chem. Soc. 2021, 143, 8, 3060-3064. Apr-1-2021 Jerker
Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas. G. P. Acuna, F. M. Mller, P. Holzmeister, S. Beater, B. Lalkens, P. Tinnefeld. Science 26 October 2012 vol 338: 506-511. Nov-1-2012 Per
Fluorescence Polarization and Fluctuation Analysis Monitors Subunit Proximity, Stoichiometry, and Protein Complex Hydrodynamics. Tuan A. Nguyen, Pabak Sarkar, Jithesh V. Veetil, Srinagesh V. Koushik, Steven S. Vogel. PLoS ONE. 1 May 2012, Volume 7, Issue 5, e38209. Jun-14-2012 Per
Fluorescence probes to detect lipid-derived radicals. Ken-ichi Yamada, Fumiya Mito, Yuta Matsuoka, Satsuki Ide, Kazushige Shikimachi, Ayano Fujiki, Daiki Kusakabe, Yuma Ishida, Masataka Enoki, Arisa Tada, Miyuki Ariyoshi, Toshihide Yamasaki & Mayumi Yamato. Nature Chemical Biology Vol 12 August 2016, 608-614. Apr-21-2017 Saptaswa
Fluorescence spectral correlation spectroscopy (FSCS) for probes with highly overlapping emission spectra. Ales Benda, Peter Kapusta, Martin Hof, and Katharina Gaus. Optics Express Vol. 22, No. 3 2014, 2973-2988. Apr-25-2014 Stefan
Fluorescent D-Amino Acids for Super-resolution Microscopy of the Bacterial Cell Wall. Chen Zhang, Luc Reymond, Ophélie Rutschmann, Mischa A. Meyer, Julien Denereaz, Jiangtao Qiao, Faustine Ryckebusch, Juliette Griffié, Willi L. Stepp, and Suliana Manley. ACS Chem. Biol. 2022, 17, 2418-2424. Dec-01-2022 Joachim
Formation kinetics and quantum yield of photon-induced electron ejection from NADH in aqueous solution. David W. Boldridge. Thomas Hellman Morton and Gary W. Scott. Chemical Physics Letters 1984 Volume 108, number 5, 461-465. Jan-24-2013 Thiemo
FRET in Cell Biology: Still Shining in the Age of Super-Resolution? Hernn E. Grecco and Peter J. Verveer. ChemPhysChem 2011, 12, 484-490. Oct-19-2012 Daniel
FRET-Based Identification of mRNAs Undergoing Translation. Benjamin Stevens, Chunlai Chen, Ian Farrell, Haibo Zhang, Jaskiran Kaur, Steven L. Broitman, Zeev Smilansky, Barry S. Cooperman, Yale E. Goldman. PLoS ONE. Volume 7, Issue 5, e38344. Jun-14-2012 Per
Functional Nanoscale Organization of Signaling Molecules Downstream of the T Cell Antigen Receptor. Eilon Sherman, Valarie Barr, Suliana Manley, George Patterson, Lakshmi Balagopalan, Itoro Akpan, Carole K. Regan, Robert K. Merrill, Connie L. Sommers, Jennifer Lippincott-Schwartz, and Lawrence E. Samelson. Immunity 35, 705-720, November 23, 2011. Dec-15-2011 Sofia
Future and challenges for hybrid upconversion nanosystems. Shihui Wen, Jiajia Zhou, P. James Schuck, Yung Doug Suh, Timothy W. Schmidt and Dayong Jin. Nature Photonics VOL 13 December 2019 828-838. www.nature.com/naturephotonics. Feb-06-2020 Lucía
Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution. Gary C H Mo, Brian Ross, Fabian Hertel, Premashis Manna, Xinxing Yang, Eric Greenwald, Chris Booth, Ashlee M Plummer, Brian Tenner, Zan Chen, Yuxiao Wang, Eileen J Kennedy, Philip A Cole, Karen G Fleming, Amy Palmer, Ralph Jimenez, Jie Xiao, Peter Dedecker & Jin Zhang. Published online 13 March 2017; doi:10.1038/nmeth.4221. Mar-31-2017 Elin
Geometry sensing by self-organized protein patterns. Jakob Schweizer, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mnch, and Petra Schwille. PNAS Early Edition 2012: 6 pages. Nov-08-2012 Lei
Giant light-harvesting nanoantenna for single-molecule detection in ambient light. Kateryna Trofymchuk, Andreas Reisch, Pascal Didier, Franois Fras, Pierre Gilliot, Yves Mely & Andrey S. Klymchenko. Nature Photonics 11, 657-663 (2017) doi:10.1038/s41566-017-0001-7. Jan-25-2018
Giant Suppression of Photobleaching for Single Molecule Detection via the Purcell Effect. Hu Cang, Yongmin Liu, Yuan Wang, Xiaobo Yin, and Xiang Zhang. Nano Lett 2013, 13 (12), pp 5949-5953. Nov-29-2013 Lei
Gold-Nanorod-Enhanced Fluorescence Correlation Spectroscopy of Fluorophores with High Quantum Yield in Lipid Bilayers. Biswajit Pradhan, Saumyakanti Khatua, Ankur Gupta, Thijs Aartsma, Gerard Canters, and Michel Orrit. J. Phys. Chem. C 2016, 120, 25996-26003. Feb-27-2017 Stefan
Global metabolomics. Allison Doerr. Nature methods. Vol.14 No.1, January 2017, page 32. Jan-13-2017 Per
GPI-anchored proteins do not reside in ordered domains in the live cell plasma membrane Eva Sevcsik, Mario Brameshuber, Martin Flser, Julian Weghuber, Alf Honigmann & Gerhard J. Schtz. Nature communications 6:6969 2015, DOI: 10.1038/ncomms7969. Jun-04-2015 Stefan
Hacking the Bell test using classical light in energy-time entanglement-based quantum key distribution. Jonathan Jogenfors, Ashraf Mohamed Elhassan, Johan Ahrens, Mohamed Bourennane, Jan-Åke Larsson. Sci. Adv. 2015;1:e1500793. Mar-31-2022 Ashraf
Heterochromatic Nonlinear Optical Responses in Upconversion Nanoparticles for Super-Resolution Nanoscopy. Chaohao Chen, Baolei Liu, Yongtao Liu, Jiayan Liao, Xuchen Shan, Fan Wang, and Dayong Jin. Adv. Mater. 2021, 2008847, 9 pages. Apr-29-2021 Lucía
Heterogeneity and Turnover of Intermediates during Amyloid-beta (Abeta) Peptide Aggregation Studied by Fluorescence Correlation Spectroscopy. Ann Tiiman, Jri Jarvet, Astrid Grslund, and Vladana Vukojević. Biochemistry 2015, 54, 7203-7211. Jan-29-2016 Per
High photon count rates improve the quality of super-resolution fluorescence fluctuation spectroscopy. Falk Schneider, Pablo Hernandez-Varas, B Christoffer Lagerholm, Dilip Shrestha, Erdinc Sezgin, M Julia Roberti, Giulia Ossato, Frank Hecht, Christian Eggeling and Iztok Urbancic. J. Phys. D: Appl. Phys. 53 (2020) 164003 (12pp) May-07-2020 Jan
High-speed volumetric two-photon fluorescence imaging of neurovascular dynamics. Jiang Lan Fan, Jose A. Rivera, Wei Sun, John Peterson, Henry Haeberle, Sam Rubin & Na Ji. Nature Communications (2020)11:6020 https://doi.org/10.1038/s41467-020-19851-1 Jan-21-2021 Baris
High-Throughput Molecular Imaging via Deep-Learning-Enabled Raman Spectroscopy. Conor C. Horgan, Magnus Jensen, Anika Nagelkerke, Jean-Philippe St-Pierre, Tom Vercauteren, Molly M. Stevens, and Mads S. Bergholt. Anal. Chem. 2021, 93, 15850-15860. Dec-9-2021 Baris
Highly Efficient FRET from a Single Nitrogen-Vacancy Center in Nanodiamonds to a Single Organic Molecule. Julia Tisler, Rolf Reuter, Anke Lämmle, Fedor Jelezko, Gopalakrishnan Balasubramanian, Philip R. Hemmer, Friedemann Reinhard, and Jörg Wrachtrup. ACSNano VOL. 5, NO. 10 7893-7898. Mar-29-2012 Evangelos
Highly Sensitive Method for Assay of Drug-Induced Apoptosis Using Fluorescence Correlation Spectroscopy. Lingao Ruan, Zhancheng Xu, Tao Lan, Jinjie Wang, Heng Liu, Chaodong Li, Chaoqing Dong, and Jicun Ren. Anal. Chem. 2012, 84, 7350-7358. Sep-20-2012 Evangelos
How Does the Cell Position Its Proteins? John Travis. Science 2011 Vol. 334: 1048-9. Dec-08-2011 Stefan
Human Platelet Vesicles Exhibit Distinct Size and Proteome. Bhanu P. Jena, Paul M. Stemmer, Sunxi Wang, Guangzhao Mao, Kenneth T. Lewis, and Daniel A. Walz. J. Proteome Res. 2017, 16, 2333-2338. May-16-2018 Miao
Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factormediated upregulation of caveolin-1. Yi Wang, Olga Roche, Chaoying Xu, Eduardo H. Moriyama, Pardeep Heir, Jacky Chung, Frederik C. Roos, Yonghong Chen, Greg Finak, Michael Milosevic, Brian C. Wilsonb, Bin Tean Teh, Morag Park, Meredith S. Irwin, and Michael Ohh. PNAS 2012. Mar-15-2012 Lei
Illuminating NAD+ Metabolism in Live Cells and In Vivo Using a Genetically Encoded Fluorescent Sensor. Yejun Zou, Aoxue Wang, Li Huang, Xudong Zhu, Qingxun Hu, Yinan Zhang, Xianjun Chen, Fengwen Li, Qiaohui Wang, Hu Wang, Renmei Liu, Fangting Zuo, Ting Li, Jing Yao, Yajie Qian, Mei Shi, Xiao Yue, Weicai Chen, Zhuo Zhang, Congrong Wang, Yong Zhou, Linyong Zhu, Zhenyu Ju, Joseph Loscalzo, Yi Yang, and Yuzheng Zhao. Developmental Cell 53 2020, 240-252. Apr-30-2020 Elin
Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison. Eva Wegel, Antonia Ghler, B. Christoffer Lagerholm, Alan Wainman, Stephan Uphoff, Rainer Kaufmann & Ian M. Dobbie. Scientific Reports 6:27290. DOI: 10.1038/srep27290. Jun-17-2016 Joachim
Imaging Proton Transport in Giant Vesicles through Cyclic Peptide-Polymer Conjugate Nanotube Transmembrane Ion Channels. Jason G. Binfield, Johannes C. Brendel, Neil R. Cameron, Ahmed M. Eissa, and Sbastien Perrier. Macromol. Rapid Commun. 2018, 1700831 (6 pages). May-3-2018 Saptaswa
Immobilization of Cyanines in DNA Produces Systematic Increases in Fluorescence Intensity. Natalie A. Pace, Scott P. Hennelly, and Peter M. Goodwin. https://doi.org/10.1021/acs.jpclett.1c02022. J. Phys. Chem. Lett. 2021, 12, 8963-8971. Oct-21-2021 Jerker
Impact of Cyanine Conformational Restraint in the Near-Infrared Range. Siddharth S. Matikonda, Gabrielle Hammersley, Nikita Kumari, Lennart Grabenhorst, Viktorija Glembockyte, Philip Tinnefeld, Joseph Ivanic, Marcia Levitus, and Martin J. Schnermann. J. Org. Chem. 2020, 85, 5907-5915. Jan-26-2023 Jerker
Improving FRET dynamic range with bright green and red fluorescent proteins. Amy J Lam, Franois St-Pierre, Yiyang Gong, Jesse D Marshall, Paula J Cranfill, Michelle A Baird, Michael R McKeown, Jrg Wiedenmann, Michael W Davidson, Mark J Schnitzer, Roger Y Tsien & Michael Z Lin. Nature methods 2012. Sep-20-2012 Evangelos
Improving Quantum Yield of Upconverting Nanoparticles in Aqueous Media via Emission Sensitization. Michael D. Wisser, Stefan Fischer, Chris Siefe, A. Paul Alivisatos, Alberto Salleo, and Jennifer A. Dionne. Nano Lett. 2018, XXX, XXX-XXX May-24-2018 Niusha
In Vitro Reconstitution of Eukaryotic Ion Channels Using Droplet Interface Bilayers. Sebastian Leptihn, James R. Thompson, J. Clive Ellory, Stephen J. Tucker, and Mark I. Wallace. J. Am. Chem. Soc. 2013, in print. dx.doi.org/10.1021/ja200128n. Jan-31-2013 Stefan
In Vivo Multiphoton NADH Fluorescence Reveals Depth-Dependent Keratinocyte Metabolism in Human Skin. Mihaela Balu, Amaan Mazhar, Carole K. Hayakawa, Richa Mittal, Tatiana B. Krasieva, Karsten Konig, Vasan Venugopalan, and Bruce J. Tromberg. Biophysical Journal Volume 104 January 2013 258-267. Jan-24-2013 Thiemo
In Vivo Single-Molecule Detection of Nanoparticles for Multiphoton Fluorescence Correlation Spectroscopy to Quantify Cerebral BloodFlow. Xu Fu, Pradoldej Sompol, Jason A. Brandon, Christopher M. Norris, Thomas Wilkop,Lance A. Johnson, and Christopher I. Richards. NanoLett.2020, 20, 6135-6141. Sep-24-2020 Baris
Initial state of DNA-Dye complex sets the stage for protein induced fluorescence modulation. Fahad Rashid, Vlad-Stefan Raducanu, Manal S. Zaher, Muhammad Tehseen, Satoshi Habuchi & Samir M. Hamdan. Nature Communications (2019) 10:2114. https://doi.org/10.1038/s41467-019-10137-9 Nov-21-2019
Instant super-resolution imaging in live cells and embryos via analog image processing. Andrew G York, Panagiotis Chandris, Damian Dalle Nogare, Jeffrey Head, Peter Wawrzusin, Robert S Fischer, Ajay Chitnis & Hari Shroff. Nature methods, vol.10 no.11, November 2013: 1122-1130. Dec-12-2013 Vova
Integrated Compact Optical Vortex Beam Emitters. Xinlun Cai, Jianwei Wang, Michael J. Strain, Benjamin Johnson-Morris, Jiangbo Zhu, Marc Sorel, Jeremy L. O'Brien, Mark G. Thompson, Siyuan Yu. Science 338, 363-366 (2012). Oct-25-2012 Jerker
Intrinsic anti-Stokes emission in living HeLa cells. Laura Kacenauskaite, Dovydas Gabrielaitis, Nicolai Baerentsen, Karen L. Martinez, Tom Vosch, Bo W. Laursen. Plos one https://doi.org/10.1371/journal.pone.0230441 March 16, 2020. Jun-25-2020 Jerker
Investigation of ground- and excited-state photophysical properties of 5,10,15,20-tetra(4-pyridyl)-21H,23H-porphyrin with ruthenium outlying complexes. R. N. Sampaio, W. R. Gomes, D. M. S. Araujo, A. E. H. Machado, R. A. Silva, A. Marletta, I. E. Borissevitch, A. S. Ito, L. R. Dinelli, A. A. Batista, S. C. Zlio, P. J. Goncalves, and N. M. Barbosa Neto. J. Phys. Chem. A 2012, 116, 18-26. Feb-22-2012 Thiemo
Irradiation- and sensitizer-dependent changes in the lifetime of intracellular singlet oxygen produced in a photosensitized process. Elsa F. F. da Silva, Brian W. Pedersen, Thomas Breitenbach, Rasmus Toftegaard, Marina K. Kuimova, Luis G. Arnaut, and Peter R. Ogilby. J. Phys. Chem. B 2012, 116, 445-461. Feb-22-2012 Thiemo
ITO-based electro-absorption modulator for photonic neural activation function. R. Amin, J. K. George, S. Sun, T. Ferreira de Lima, A. N. Tait, J. B. Khurgin, M. Miscuglio, B. J. Shastri, P. R. Prucnal, T. El-Ghazawi, and V. J. Sorger. APL Mater. 7, 081112 (2019); doi: 10.1063/1.5109039. Feb-18-2021 Halvor
Kilohertz two-photon brain imaging in awake mice. Tong Zhang, Oscar Hernandez, Radoslaw Chrapkiewicz, Adam Shai, Mark J. Wagner, Yanping Zhang, Cheng-Hsun Wu, Jin Zhong Li, Masatoshi Inoue, Yiyang Gong, Biafra Ahanonu, Hongkui Zeng, Haruhiko Bito and Mark J. Schnitzer. Nature Methods Vol 16 November 2019 1119-11. Dec-19-2019 Elin
Kinetic Models for the Role of Protein Thiols during Oxidation in Beer. Mogens L. Andersen, Matheo Gundermann, Bente P. Danielsen, and Marianne N. Lund. J. Agric. Food Chem. 2017, XXX, XXX-XXX. Dec-01-2017 Saptaswa
K-Ras4B Remains Monomeric on Membranes over a Wide Range of Surface Densities and Lipid Compositions. Jean K. Chung, Young Kwang Lee, John-Paul Denson, William K. Gillette, Steven Alvarez, Andrew G. Stephen, and Jay T. Groves. Biophysical Journal 114, 137-145, January 9, 2018 Aug-30-2018 Stefan
Laser pulse trains for controlling excited state dynamics of adenine in water. Jens Petersen, Matthias Wohlgemuth, Bernhard Sellner, Vlasta Bonacic-Koutecky, Hans Lischka and Roland Mitric. Phys. Chem. Chem. Phys. 2012 View Online DOI: 10.1039/c2cp24002e. Feb-22-2012 Thiemo
Label-free characterization of single extracellular vesicles using two-photon fluorescence lifetime imaging microscopy of NAD(P)H. Janet E. Sorrells, Elisabeth M. Martin, Edita Aksamitiene, Prabuddha Mukherjee, Aneesh Alex, Eric J. Chaney, Marina Marjanovic & Stephen A. Boppart. Scientific Reports (2021) 11:3308 https://doi.org/10.1038/s41598-020-80813-0 May-20-2021 Brant
Label-free and charge-sensitive dynamic imaging of lipid membrane hydration on millisecond time scales. Orly B. Tarun, Christof Hannesschlger, Peter Pohl, and Sylvie Roke. PNAS April 17, 2018, vol. 115, no. 16, 4081-4086. May-03-2018 Saptaswa
Label-free detection and molecular profiling of exosomes with a nano-plasmonic sensor. Hyungsoon Im, Huilin Shao, Yong Il Park, Vanessa M Peterson, Cesar M Castro, Ralph Weissleder & Hakho Lee. Nature biotechnology Volume 32 Number 5 May 2014, 490-498. May-31-2018
Label-free imaging of amyloid plaques in Alzheimer's disease with stimulated Raman scattering microscopy. Minbiao Ji, Michal Arbel, Lili Zhang, Christian W. Freudiger, Steven S.Hou, Dongdong Lin, Xinju Yang, Brian J. Bacskai, X. Sunney Xie. Sci. Adv. 2018; 4 : eaat7715. Nov-29-2018 Saptaswa
Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy. Luay M. Almassalha, Greta M. Bauer, John E. Chandlera, Scott Gladsteina, Lusik Cherkezyan, Yolanda Stypula-Cyrus, Samuel Weinberg, Di Zhang, Peder Thusgaard Ruhoff, Hemant K. Roy, Hariharan Subramanian, Navdeep S. Chandel, Igal Szleifer, and Vadim Backmana. PNAS, Published online October 4, 2016. Apr-21-2017 Saptaswa
Label-free metabolic imaging by mid-infrared optoacoustic microscopy in living cells. Miguel A. Pleitez, Asrar Ali Khan, Alice Sold, Andriy Chmyrov, Josefine Reber, Francesca Gasparin, Markus R. Seeger, Benedikt Schtz, Stephan Herzig, Marcel Scheideler and Vasilis Ntziachristos. Nature Biotechnology 2019, https://doi.org/10.1038/s41587-019-0359-9 Jan-9-2020 Jerker
Label-free quantification of the effects of lithium niobate polarization on cell adhesion via holographic microscopy. Biagio Mandracchia, Oriella Gennari, Alessia Bramanti, Simonetta Grilli, Pietro Ferraro. J. Biophotonics. 2018;11:e201700332. https://doi.org/10.1002/jbio.201700332 Apr-18-2019 Alessandro
Lanthanide-doped inorganic nanoparticles turn molecular triplet excitons bright. Sanyang Han, Renren Deng, Qifei Gu, Limeng Ni, Uyen Huynh, Jiangbin Zhang, Zhigao Yi, Baodan Zhao, Hiroyuki Tamura, Anton Pershin, Hui Xu, Zhiyuan Huang, Shahab Ahmad, Mojtaba Abdi-Jalebi, Aditya Sadhanala, Ming Lee Tang, Artem Bakulin, David Beljonne, Xiaogang Liu & Akshay Rao. Nature volume 587, pages594-599(2020). Dec-03-2020 Haichun
Layer with reduced viscosity at water-oil interfaces probed by fluorescence correlation spectroscopy. Dapeng Wang, Leonid Pevzner, Chen Li, Kalina Peneva, Christopher Y. Li, Derek Y. C. Chan, Klaus Mllen, Markus Mezger, Kaloian Koynov, and Hans-Jrgen Butt. Physical Review E 87, 012403 (2013), 12403-1-7. May-23-2013 Stefan
Ligands for Fluorescence Correlation Spectroscopy on Protein-Coupled Receptors. D. Jakobs, T Sorkalla and H Hberlein. Current Medicinal Chemistry 2012, 19 4722-4730. Nov-29-2012 Stefan
Linking Single-Molecule Blinking to Chromophore Structure and Redox Potentials. Ingo H. Stein, Stella Capone, Jochem H. Smit, Fabian Baumann, Thorben Cordes, and Philip Tinnefeld. ChemPhysChem 2012, 13, 931-937. May-10-2012 Jonas
Links between metabolism and cancer. Chi V. Dang. Genes Dev. 2012 26: 877-890. Jun-07-2012 Thiemo
Lissajous Scanning Two-photon Endomicroscope for In vivo Tissue Imaging. Daniel Youngsuk Kim, Kyungmin Hwang, Jinhyo Ahn, Yeong-Hyeon Seo, Jae-Beom Kim, Soyoung Lee, Jin-Hui Yoon, Eunji Kong, Yong Jeong, Sangyong Jon, Pilhan Kim & Ki-Hun Jeong. Scientific Reports (2019) 9:3560 https://doi.org/10.1038/s41598-019-38762-w. Oct-08-2020 Elin
Live-cell 3D super-resolution imaging in thick biological samples. Francesca Cella Zanacchi, Zeno Lavagnino1, Michela Perrone Donnorso, Alessio Del Bue, Laura Furia, Mario Faretta & Alberto Diaspro. Nature Methods Vol.8 no.12: 1047-1050. Jan-19-2012 Jonas
Live-Cell Superresolution Imaging by Pulsed STED Two-Photon Excitation Microscopy. Kevin T. Takasaki, Jun B. Ding, and Bernardo L. Sabatini. Biophysical Journal Volume 104 February 2013 770-777. Mar-21-2013 Per
Low toxic fluorescent nanoprobe applicable for sensing pH changes in biological environment. Lihua Lu, Chenfu Liu, Guodong Li, Li-Juan Liu, Chung-Hang Leung, Dik-Lung Ma. Sensors and Actuators B 257 (2018) 860-865. Jun-7-2018 Baris
Long-Term Observation of Fluorescence of Free Single Molecules To Explore Protein-Folding Energy Landscapes. Kiyoto Kamagata, Toshifumi Kawaguchi, Yoshitomo Iwahashi, Akinori Baba, Kazuya Fujimoto, Tamiki Komatsuzaki, Yoshihiro Sambongi, Yuji Goto, and Satoshi Takahashi. J. Am. Chem. Soc. 2012, 134, 11525-11532. Jan-31-2013 Evangelos
Long wavelength single photon like driven photolysis via triplet triplet annihilation. Ling Huang, Le Zeng, Yongzhi Chen, Nuo Yu, Lei Wang, Kai Huang, Yang Zhao & Gang Han. Nature Communications (2021) 12:122 https://doi.org/10.1038/s41467-020-20326-6. Feb-04-2021 Elin
Magnetic Vortex Nanodiscs Enable Remote Magnetomechanical Neural Stimulation. Danijela Gregurec, Alexander W. Senko, Andrey Chuvilin, Pooja D. Reddy, Ashwin Sankararaman, Dekel Rosenfeld, Po-Han Chiang, Francisco Garcia, Ian Tafel, Georgios Varnavides, Eugenia Ciocan, and Polina Anikeeva. ACS Nano 2020, 14, 8036-8045. Apr-21-2022 Tiwary
Manipulating the fluorescence lifetime at the sub-cellular scale via photo-switchable barcoding. Yujie Xie, Maria C. Arno, Jonathan T. Husband, Miquel Torrent-Sucarrat & Rachel K. O'Reilly. Nature Communications (2020)11:2460. https://doi.org/10.1038/s41467-020-16297-3 Oct-22-2020 Niusha
Mapping Cell Membrane Fluctuations Reveals Their Active Regulation and Transient Heterogeneities. Arikta Biswas, Amal Alex, and Bidisha Sinha. Biophysical Journal 113 Oct 2017, 1768-1781. Oct-27-2017 Per
Mapping Intracellular Temperature Using Green Fluorescent Protein. Jon S. Donner, Sebastian A. Thompson, Mark P. Kreuzer, Guillaume Baffou, and Romain Quidant. Nano Lett. 2012, XXX, XXX-XXX. Mar-15-2012 Lei
Mapping of hemoglobin in erythrocytes and erythrocyte ghosts using two photon excitation fluorescence microscopy. Katarina Bukara, Svetlana Jovanić, Ivana T. Drvenica, Ana Stancić, Vesna Ilić, Mihailo D. Rabasović, Dejan Pantelić, Branislav Jelenković, Branko Bugarski, Aleksandar J. Krmpot., Biomed. Opt. 22(2), 026003 (2017), doi: 10.1117/1.JBO.22.2.026003. Mar-20-2017 Per
Mass Action at the Single-Molecule Level. Min Ju Shon and Adam E. Cohen. J. Am. Chem. Soc. 2012, 134, 14618-14623. dx.doi.org/10.1021/ja3062425. Jan-31-2013 Stefan
Maturation-Dependent HIV-1 Surface Protein Redistribution Revealed by Fluorescence Nanoscopy. Jakub Chojnacki, Thorsten Staudt, Brbel Glass, Pit Bingen, Johann Engelhardt, Maria Anders, Jale Schneider, Barbara Mller, Stefan W. Hell, Hans-Georg Krusslich. Science 26 October 2012 vol 338: 524-527. Nov-1-2012 Per
Measurement of Rapid Protein Diffusion in the Cytoplasm by Photo-Converted Intensity Profile Expansion. Rotem Gura Sadovsky, Shlomi Brielle, Daniel Kaganovich, Jeremy L. England. Cell Reports 18, 2795-2806. http://dx.doi.org/10.1016/j.celrep.2017.02.063 May-05-2017 Stefan
Measuring fast stochastic displacements of bio-membranes with dynamic optical displacement spectroscopy. C. Monzel, D. Schmidt, C. Kleusch, D. Kirchenbchler, U. Seifert, A-S Smith, K. Sengupta & R. Merkel. Nature Communications 6, 06 October 2015, Article number: 8162 doi:10.1038/ncomms9162. May-27-2016 Vova
Measuring Mobility in Chromatin by Intensity-Sorted FCS. Melody Di Bona, Michael A. Mancini, Davide Mazza, Giuseppe Vicidomini, Alberto Diaspro, and Luca Lanzano . Biophysical Journal 116, 1-13, March 19, 2019. Apr-04-2019 Joachim
Measuring Protein Binding to Lipid Vesicles by Fluorescence Cross-Correlation Spectroscopy. Daniela Kruger, Jan Ebenhan, Stefan Werner, and Kirsten Bacia1. Biophysical Journal 113, 1311-1320, September 19, 2017. Nov-17-2017 Jerker
Mechanism of Cyanine5 to Cyanine3 Photoconversion and Its Application for High-Density Single-Particle Tracking in a Living Cell. Yoonjung Cho, Hyeong Jeon An, Taehoon Kim, Chulbom Lee, and Nam Ki Lee. J. Am. Chem. Soc. 2021, 143, 14125-14135. Apr-7-2022 Jerker
Microfluidity mapping using fluorescence correlation spectroscopy: A new way to investigate plasma membrane microorganization of living cells. Pascale Winckler, Aurlie Cailler, Rgis Deturche, Pierre Jeannesson, Hamid Morjani, Rodolphe Jaffiol. Biochimica et Biophysica Acta 1818 (2012) 2477-2485. Oct-11-2012 Vova
Microresonator soliton dual-comb imaging. Chengying Bao, Myoung-Gyun Suh, and Kerry Vahala. Optica Vol. 6, No. 9 September 2019, 1110. May-14-2020 Halvor
Microresonator soliton dual-comb spectroscopy. Myoung-Gyun Suh, Qi-Fan Yang, Ki Youl Yang, Xu Yi, Kerry J. Vahala. Science 4 November 2016 Vol 354 Issue 6312. May-14-2020 Halvor
Millitesla magnetic field effects on the photocycle of an animal cryptochrome. Dean M. W. Sheppard, Jing Li, Kevin B. Henbest, Simon R. T. Neil, Kiminori Maeda, Jonathan Storey, Erik Schleicher, Till Biskup, Ryan Rodriguez, Stefan Weber, P. J. Hore, Christiane R. Timmel & Stuart R. Mackenzie. Scientific Reports 7:42228, p. 1-7, DOI: 10.1038/srep42228. Feb-17-2017 Johan
MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells. Klaus C. Gwosch, Jasmin K. Pape, Francisco Balzarotti, Philipp Hoess, Jan Ellenberg, Jonas Ries & Stefan W. Hell. Nature Methods volume 17, pages 217-224 (2020). Jan-28-2021 Chinmaya
Model-free uncertainty estimation in stochastical optical fluctuation imaging (SOFI) leads to a doubled temporal resolution. Wim Vandenberg, Sam Duw, Marcel Leutenegger, Benjamien Moeyaert, Bartosz Krajnik, Theo Lasser and Peter Dedecker. Biomedical optics express Vol. 7, No. 2, DOI:10.1364/BOE.7.000467. Jan-29-2016 Per
Molecular recognition of a single sphingolipid species by a protein's transmembrane domain. F. Xabier Contreras, Andreas M. Ernst, Per Haberkant, Patrik Bjrkholm, Erik Lindahl, Basak Gnen, Christian Tischer, Arne Elofsson, Gunnar von Heijne, Christoph Thiele, Rainer Pepperkok, Felix Wieland & Britta Brügger. Nature 26 January 2012 Vol 481:525. Feb-09-2012 Jerker
Molecular Size Matters: Ultrafast Dye Singlet Sensitization Pathways to Bright Nanoparticle Emission. Jing Liu, Pieter Geiregat, Luca Pilia, Rik Van Deun, and Flavia Artizzu. Adv. Optical Mater. 2021, 2001678. Mar-18-2021 Uliana
Monitoring drug nanocarriers in human blood by near-infrared fluorescence correlation spectroscopy. Inka Negwer, Andreas Best, Meike Schinnerer, Olga Schfer, Leon Capeloa, Manfred Wagner, Manfred Schmidt, Volker Mailnder, Mark Helm, Matthias Barz, Hans-Jrgen Butt, & Kaloian Koynov. Nature communications (2018)9:5306 https://doi.org/10.1038/s41467-018-07755-0 Jan-17-2019 Brant
Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET. Antonino Ingargiola, Shimon Weiss, and Eitan Lerner. J. Phys. Chem. B 2018. Dec-06-2018 Per
Moving to a World Beyond "p<0.05". Ronald L. Wasserstein, Allen L. Schirm & Nicole A. Lazar. the American Statistician 2019, Vol. 73, No. S1, 1-19: Editorial https://doi.org/10.1080/00031305.2019.1583913 Apr-04-2019 Joachim
mScarlet: A bright monomeric red fluorescent protein for cellular imaging. Daphne S Bindels, Lindsay Haarbosch, Laura van Weeren, Marten Postma, Katrin E Wiese, Marieke Mastop, Sylvain Aumonier, Guillaume Gotthard, Antoine Royant, Mark A Hink & Theodorus W J Gadella Jr. Nature methods. Vol.14 No.1, January 2017, page 53-64. doi:10.1038 Jan-13-2017 Per
Multicolor Fluorescence Nanoscopy in Fixed and Living Cells by Exciting Conventional Fluorophores with a Single Wavelength. Ilaria Testa, Christian A. Wurm, Rebecca Medda, Ellen Rothermel, Claas von Middendorf, Jonas Flling, Stefan Jakobs, Andreas Schnle, Stefan W. Hell, and Christian Eggeling. Biophysical Journal Volume 99 October 2010 2686-2694. Oct-19-2012 Daniel
Multicolour nanoscopy of fixed and living cells with a single STED beam and hyperspectral detection. Franziska R. Winter, Maria Loidolt, Volker Westphal, Alexey N. Butkevich, Carola Gregor, Steffen J. Sahl & Stefan W. Hell. Scientific Reports 7:46492 2017, DOI: 10.1038/srep46492. May-19-2017 Jan
Multicolor Single Molecule Tracking of Stochastically Active Synthetic Dyes. Alexander Benke, Nicolas Olivier, Julia Gunzenhuser, and Suliana Manley. Nano Lett. 2012, 12, 2619-2624. Jun-21-2012 Lei
Multimodal optical imaging for detecting breast cancer. Rakesh Patel, Ashraf Khan, Dennis Wirth, Michal Kamionek, Dina Kandil, Robert Quinlan, and Anna N. Yaroslavsky. Journal of Biomedical Optics 17(6), 066008 (10 pages June 2012) Jun-21-2012 Lei
Multiphoton Excitation of Upconverting Nanoparticles in Pulsed Regime. Jose Hodak, Zhijun Chen, Si Wu, and Roberto Etchenique. Anal. Chem. 2016, 88, 1468-1475 Sep-09-2021 Elin
Multiple-Labeled Antibodies Behave Like Single Emitters in Photoswitching Buffer. Dominic A. Helmerich, Gerti Beliu, and Markus Sauer. ACS Nano 2020, 14, 12629-12641. Apr-1-2021 Jerker
Multiplexed imaging of high density libraries of RNAs with MERFISH and expansion microscopy. Guiping Wang, Jeffrey R. Moffitt, Xiaowei Zhuang. bioRxiv preprint first posted online Dec. 22, 2017; doi: http://dx.doi.org/10.1101/238899. Jan-25-2018 Stefan
Multiplexed multiple-tau auto- and cross-correlators on a single field programmable gate array. G. Mocsr, B. Kreith, J. Buchholz, J. W. Krieger, J. Langowski, and G. Vmosi, Review of scientific instruments 83 2012, 046101-3. May-31-2012 Jerker
Multiplexing PKA and ERK1&2 kinases FRET biosensors in living cells using single excitation wavelength dual colour FLIM. Claire Demeautis, François Sipieter, Julien Roul, Catherine Chapuis, Sergi Padilla-Parra, Franck B. Riquet & Marc Tramier. Scientific Reports 7:41026, 14 pages, DOI: 10.1038/srep41026. Feb-17-2017 Johan
Multispectral optical tweezers for biochemical fingerprinting of CD9-positive exosome subpopulations. Randy P. Carney, Sidhartha Hazari, Macalistair Colquhoun, Di Tran, Billanna Hwang, Michael S. Mulligan, James D. Bryers, Eugenia Girda, Gary S. Leiserowitz, Zachary J. Smith, and Kit S. Lam. Anal Chem. 2017 May 16;89(10):5357-5363. May-31-2018 Katia
Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes. Francisco Balzarotti, Yvan Eilers, Klaus C. Gwosch, Arvid H. Gynnå, Volker Westphal, Fernando D. Stefani, Johan Elf, Stefan W. Hell. Science 355 , 606-612 (2017). Mar-10-2017 Joachim
Nanometric axial localization of single fluorescent molecules with modulated excitation. Pierre Jouchet, Clément Cabriel, Nicolas Bourg, Marion Bardou, Christian Poüs, Emmanuel Fort and Sandrine Lévêque-Fort. Nature Photonics vol 15 April 2021 297-304. Jan-28-2022 Hanie
Nanophotonic Waveguide Enhanced Raman Spectroscopy of Biological Submonolayers. Ashim Dhakal, Pieter C. Wuytens, Frederic Peyskens, Karolien Jans, Nicolas Le Thomas, and Roel Baets. ACS Photonics 2016, 3, 2141-2149. Oct-03-2019 Amin
Nanoscale dynamics of phospholipids reveals an optimal assembly mechanism of pore-forming proteins in bilayer membranes. Nirod Kumar Sarangi, K. G. Ayappa, Sandhya. S. Visweswariah and Jaydeep Kumar Basu. Phys. Chem. Chem. Phys., 2016, 18, 29935-29945. Nov-11-2016 Joachim
Nanoscale live-cell imaging using hopping probe ion conductance microscopy. Pavel Novak, Chao Li, Andrew I Shevchuk, Ruben Stepanyan, Matthew Caldwell, Simon Hughes, Trevor G Smart, Julia Gorelik, Victor P Ostanin, Max J Lab, Guy W J Moss, Gregory I Frolenkov, David Klenerman & Yuri E Korchev. Nature Methods Vol.6 No.4 April 2009 279-282. Apr-25-2014 Stefan
Nanoscale Fluorescence Correlation Spectroscopy on Intact Living Cell Membranes with NSOM Probes. Carlo Manzo, Thomas S. van Zanten, and Maria F. Garcia-Parajo. Biophysical Journal Volume 100 January 2011 L08-L10. Jun-21-2012 Lei
Nanoscale Spatiotemporal Diffusion Modes Measured by Simultaneous Confocal and Stimulated Emission Depletion Nanoscopy Imaging. Falk Schneider, Dominic Waithe, Silvia Galiani, Jorge Bernardino de la Serna, Erdinc Sezgin, and Christian Eggeling. Nano Lett. 2018, 18, 4233-4240. Aug-30-2018 Stefan
Nanoscopic anatomy of dynamic multi-protein complexes at membranes resolved by graphene-induced energy transfer. Nadia Füllbrunn, Zehao Li, Lara Jorde, Christian P Richter, Rainer Kurre, Lars Langemeyer, Changyuan Yu, Carola Meyer, Jörg Enderlein, Christian Ungermann, Jacob Piehler, Changjiang You. eLife 2021;10:e62501 doi: 10.7554/eLife.62501. Mar-03-2022 Joachim
Nanoscopic Approach to Quantification of Equilibrium and Rate Constants of Complex Formation at Single-Molecule Level. Xuzhu Zhang, Evangelos Sisamakis, Krzysztof Sozanski, and Robert Holyst. J. Phys. Chem. Lett. 2017, 8, 5785-5791. Nov-24-2017 Elin
Nanoscopy in a Living Mouse Brain. Sebastian Berning, Katrin I. Willig, Heinz Steffens, Payam Dibaj, Stefan W. Hell. Science vol 335 3 February 2012:551. Feb-09-2012
Nanoscopy of Living Brain Slices with Low Light Levels. Ilaria Testa, Nicolai T. Urban, Stefan Jakobs, Christian Eggeling, Katrin I. Willig, and Stefan W. Hell. Neuron 75 2012, 992-1000. Oct-19-2012 Daniel
Nanowaveguide-illuminated fluorescence correlation spectroscopy for single molecule studies. Joseph M. Chandler and Huizhong Xu. AIP Advances 11, 065112 (2021); doi: 10.1063/5.0051679. Jul-1-2021 Chinmaya
Near real-time intraoperative brain tumor diagnosis using stimulated Raman histology and deep neural networks. Todd C. Hollon, Balaji Pandian, Arjun R. Adapa, Esteban Urias, Akshay V. Save, Siri Sahib S. Khalsa, Daniel G. Eichberg, Randy S. D'Amico, Zia U. Farooq, Spencer Lewis, Petros D. Petridis, Tamara Marie, Ashish H. Shah, Hugh J. L. Garton, Cormac O. Maher, Jason A. Heth, Erin L. McKean, Stephen E. Sullivan, Shawn L. Hervey-Jumper, Parag G. Patil, B. Gregory Thompson, Oren Sagher, Guy M. McKhann II, Ricardo J. Komotar, Michael E. Ivan, Matija Snuderl, Marc L. Otten, Timothy D. Johnson, Michael B. Sisti, Jeffrey N. Bruce, Karin M. Muraszko, Jay Trautman, Christian W. Freudiger, Peter Canoll, Honglak Lee, Sandra Camelo-Piragua and Daniel A. Orringer. Nature Medicine 2019, https://doi.org/10.1038/s41591-019-0715-9 Jan-9-2020 Jerker
Near-infrared STED nanoscopy with an engineered bacterial phytochrome. Maria Kamper, Haisen Ta, Nickels A. Jensen, Stefan W. Hell & Stefan Jakobs. Nature communications (2018)9:4762 DOI: 10.1038/s41467-018-07246-2. Jan-17-2019 Brant
Near-Infrared Voltage Nanosensors Enable Real-Time Imaging of Neuronal Activities in Mice and Zebrafish. Jianan Liu, Rongwei Zhang, Chunfeng Shang, Yu Zhang, Yun Feng, Limin Pan, Bing Xu, Taeghwan Hyeon, Wenbo Bu, Jianlin Shi, and Jiulin Du. J. Am. Chem. Soc. 2020, 142, 17, 7858-7867. June-04-2020 Niusha
New aspects of the Warburg effect in cancer cell biology. Steven J. Bensinger, Heather R. Christofk. Seminars in Cell & Developmental Biology xxx (2012) xxxxxx. Jun-07-2012 Thiemo
New Technologies for Analysis of Extracellular Vesicles. Huilin Shao, Hyungsoon Im, Cesar M. Castro, Xandra Breakefield, Ralph Weissleder, and Hakho Lee. Chem.Rev. 2018, 118, 1917-1950. May-31-2018 Katia
Noise-Induced Modulation of the Relaxation Kinetics around a Non-Equilibrium Steady State of Non-Linear Chemical Reaction Networks. Rajesh Ramaswamy, Ivo F. Sbalzarini, Nelido Gonzalez-Segredo. PLoS ONE. Volume 6, Issue 1, e16045. Jun-14-2012 Per
Nonbleaching Fluorescence of Gold Nanoparticles and Its Applications in Cancer Cell Imaging. Hua He, Chao Xie, and Jicun Ren. Anal. Chem. 2008, 80, 5951-5957. Oct-11-2012 Vova
Nonlinear Correlation Spectroscopy (NLCS). Matthias Geissbuehler, Luigi Bonacina, Vladislav Shcheslavskiy, Noelia L. Bocchio, Stefan Geissbuehler, Marcel Leutenegger, Iwan Mrki, Jean-Pierre Wolf, and Theo Lasser. Nano Lett. 2012, 12, 1668-1672. Apr-19-2012 Stefan
Nonlinearity-induced photonic topological insulator. Lukas J. Maczewsky, Matthias Heinrich, Mark Kremer, Sergey K. Ivanov, Max Ehrhardt, Franklin Martinez. Science 06 Nov 2020: Vol. 370, Issue 6517, pp. 701-704 DOI: 10.1126/science.abd2033 Mar-4-2021 Ashraf
Note: A 4 ns hardware photon correlator based on a general-purpose field-programmable gate array development board implemented in a compact setup for fluorescence correlation spectroscopy. Stanislav Kalinin, Ralf Khnemuth, Hayk Vardanyan, and Claus A. M. Seidel. Rev Sci Instrum 83 2012, 096105 doi: 10.1063/1.4753994. Oct-11-2012 Vova
Novel Liposome-Based Surface-Enhanced Raman Spectroscopy (SERS) Substrate. William Lum, Ian Bruzas, Zohre Gorunmez, Sarah Unser, Thomas Beck, and Laura Sagle. J.Phys.Chem.Lett. 2017, 8, 2639-2646. May-31-2018 Katia
Nuclear export dynamics of RNA-protein complexes. David Grnwald, Robert H. Singer & Michael Rout. Nature Vol 475 2011: 333-341. Dec-08-2011 Stefan
Number and Brightness Analysis of LRRK2 Oligomerization in Live Cells. Nicholas G. James, Michelle A. Digman, Enrico Gratton, Barbara Barylko, Xiaodong Ding, Joseph P. Albanesi, Matthew S. Goldberg, and David M. Jameson. Biophysical Journal Volume 102 June 2012 L41-L43. Jun-07-2012 Thiemo
On-chip photonic synapse. Zengguang Cheng, Carlos Ríos, Wolfram H. P. Pernice, C. David Wright, Harish Bhaskaran. Sci. Adv. 2017; 3. Feb-18-2021 Halvor
One-Photon Plasmon Luminescence and Its Application to Correlation Spectroscopy as a Probe for Rotational and Translational Dynamics of Gold Nanorods. Alexei Tcherniak, Sergio Dominguez-Medina, Wei-Shun Chang, Pattanawit Swanglap, Liane S. Slaughter, Christy F. Landes, and Stephan Link. J. Phys. Chem. C 2011, 115, 15938-15949. May-23-2013 Stefan
Opening and Closing of the Bacterial RNA Polymerase Clamp. Anirban Chakraborty et al. Science 337, 591 (2012); DOI: 10.1126/science.1218716 Sep-20-2012 Evangelos
Optical coherence correlation spectroscopy (OCCS). Stephane Broillet, Akihiro Sato, Stefan Geissbuehler, Christophe Pache, Arno Bouwens, Theo Lasser, and Marcel Leutenegger. Optics Express Vol. 22, No. 1 2014, 782-802. Apr-25-2014 Stefan
Optical Control of Protein Activity by Fluorescent Protein Domains. Xin X. Zhou, Hokyung K. Chung, Amy J. Lam, Michael Z. Lin. Science 2012 vol 338, 810-815. Feb-14-2013 Jerker
Optical mapping of biological water in single live cells by stimulated Raman excited fluorescence microscopy. Lixue Shi, Fanghao Hu & Wei Min. Nature Communications (2019)10:4764. Oct-24-2019 Jerker
Optical Modulation and Selective Recovery of Cy5 Fluorescence. Chaoyang Fan, Jung-Cheng Hsiang, and Robert M. Dickson. ChemPhysChem 2012, 13, 1023-1029. Apr-26-2012 Vova
Optically monitoring voltage in neurons by photo-induced electron transfer through molecular wires. Evan W. Miller, John Y. Lin, E. Paxon Frady, Paul A. Steinbach, William B. Kristan, Jr, and Roger Y. Tsien. PNAS February 7, 2012 vol. 109 no. 6: 2114-2119. Feb-09-2012 Jerker
Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions. Sean Quirin, Sri Rama Prasanna Pavani, and Rafael Piestun. PNAS January 17, 2012 vol. 109 no. 3 675-679. Feb-22-2012 Thiemo
Optimized labeling of membrane proteins for applications to super-resolution imaging in confined cellular environments using monomeric streptavidin. Ingrid Chamma, Olivier Rossier, Grgory Giannone, Olivier Thoumine & Matthieu Sainlos. Nature Protocols vol.12 NO.4 2017: 748-763. May-19-2017 Jan
Outlook Breast Cancer. Michelle Grayson. Nature vol 485, 31 May 2012, S49. Jun-14-2012 Per
Outlook Breast Cancer: A dense issue. Duncan Graham-Rowe. Nature vol 485, 31 May 2012, S60-61. Jun-14-2012 Per
Outlook Breast Cancer: Delivery from breast cancer. Michael Eisenstein. Nature vol 485, 31 May 2012, S54. Jun-14-2012 Per
Outlook Breast Cancer: Not just for women. Valerie Speirs. Nature vol 485, 31 May 2012, S66. Jun-14-2012 Per
Outlook Breast Cancer: Powering up. Julie Corliss. Nature vol 485, 31 May 2012, S62-63. Jun-14-2012 Per
Outlook Breast Cancer: The Hard Facts. Amy Maxmen. Nature vol 485, 31 May 2012, S50-51. Jun-14-2012 Per
Outlook Breast Cancer: The positive in the negative. Kendall Powell. Nature vol 485, 31 May 2012, S52-53. Jun-14-2012 Per
Outlook Breast Cancer: The right trials. Patricia S. Steeg. Nature vol 485, 31 May 2012, S58-59. Jun-14-2012 Per
Outlook Breast Cancer: The rude awakening. Jocelyn Rice. Nature vol 485, 31 May 2012, S55-57. Jun-14-2012 Per
PAM: A Framework for Integrated Analysis of Imaging, Single-Molecule, and Ensemble Fluorescence Data. Waldemard Schrimpf, Anders Barth, Jelle Hendrix, and Don C. Lamb. Biophysical Journal 114, 1518-1528, April 10, 2018. Apr-19-2018 Joachim
pH Dependence of the Fluorescence Lifetime of FAD in Solution and in Cells. Md. Serajul Islam, Masato Honma, Takakazu Nakabayashi, Masataka Kinjo and Nobuhiro Ohta. Int. J. Mol. Sci. 2013, 14, 1952-1963; doi:10.3390. Jan-24-2013 Thiemo
Photobleaching and Blinking of TAMRA Induced by Mn2+. Elana M. S. Stennett, Gerdenis Kodis, and Marcia Levitus. ChemPhysChem 2012, 13, 909-913. May-31-2012 Jerker
Photoblueing of organic dyes can cause artifacts in super-resolution microscopy. Dominic A. Helmerich, Gerti Beliu, Siddharth S. Matikonda, Martin J. Schnermann and Markus Sauer. Nature Methods vol 18 March 2021 253-257 Sep-16-2021 Joachim
Photocatalytic Hydroalkylation of Aryl-Alkenes. Cornelia S. Buettner, Michael Schnürch, and Katharina Bica-Schröder. J. Org. Chem. 2022, 87, 11042-11047 Jan-26-2023 Jerker
Photochemical Reaction Patterns on Heterostructures of ZnO on Periodically Poled Lithium Niobate. Manpuneet Kaur, Qianlang Liu, Peter A. Crozier, and Robert J. Nemanich. ACS Appl. Mater. Interfaces 2016, 8, 26365-26373. Sep-23-2021 Halvor
Photo-isomerization of the Cyanine Dye Alexa-Fluor 647 (AF-647) in the Context of dSTORM Super-Resolution Microscopy. JoshuaK. G. Karlsson, Alex Laude, Michael J. Hall, and Anthony Harriman. ACS Appl. Mater. Interfaces 2019, 11, 23083-23092. Feb-17-2022 Elin
Photonic extreme learning machine by free-space optical propagation. Davide Pierangeli, Giulia Marcucci, and Claudio Conti. Photonics Research Vol. 9, No. 8 August 2021. Oct-28-2021 Alessandro
Photonics for artificial intelligence and neuromorphic computing. Bhavin J. Shastria, Alexander N. Taitc, Thomas Ferreira de Lima, Wolfram H. P. Pernice, Harish Bhaskaran, C. David Wright, Paul R. Prucnal. Nature Photonics, 2021; 15 (2): 102. Feb-18-2021 Halvor
Photothermal signal distribution analysis (PhoSDA). Markus Selmke, Marco Braun, Romy Schachoff and Frank Cichos. Phys. Chem. Chem. Phys., 2013, 15, 4250-4257. May-23-2013 Stefan
Plasma Membrane is Compartmentalized by a Self-Similar Cortical Actin Meshwork. Sanaz Sadegh, Jenny L. Higgins, Patrick C. Mannion, Michael M. Tamkun, and Diego Krapf. Phys. Rev. X 7, 011031-1:10 (2017). May-19-2017 Jan
Plasmon-Enhanced Biosensing for Multiplexed Profiling of Extracellular Vesicles. Jouha Min, Taehwang Son, Jae-Sang Hong, Pike See Cheah, Andreas Wegemann, Koushik Murlidharan, Ralph Weissleder, Hakho Lee, and Hyungsoon Im. Adv. Biosys.2020, 4, 2000003. Mar-17-2020 Maryam
Polarization modulation with optical lock-indetection reveals universalfluorescence anisotropy of subcellular structures in live cells. Meiling Guan,Miaoyan Wang, Karl Zhanghao, Xu Zhang, Meiqi Li, Wenhui Liu, Jing Niu, Xusan Yang, Long Chen, ZhenliJing, Micheal Q. Zhang, Dayong Jin, Peng Xi, and Juntao Gao. Light: Science & Applications (2022) 2) 11:4. https://doi.org/10.1038/s41377-021-0068 Feb-03-2022 Chinmaya
Polymer Dynamics, Fluorescence Correlation Spectroscopy, and the Limits of Optical Resolution. Jörg Enderlein. Physical Review Letters 108 2012:108101. May-10-2012
Probing cellular protein complexes using single-molecule pull-down. Ankur Jain, Ruijie Liu, Biswarathan Ramani, Edwin Arauz, Yuji Ishitsuka, Kaushik Ragunathan, Jeehae Park, Jie Chen, Yang K. Xiang & Taekjip Ha. Nature Vol 473 2011: 483-489. Dec-08-2011 Stefan
Probing the electromagnetic field of a 15-nanometre hotspot by single molecule imaging. Hu Cang, Anna Labno, Changgui Lu, Xiaobo Yin, Ming Liu, Christopher Gladden, Yongmin Liu & Xiang Zhang. Nature Vol. 469 2011: 385-9. Dec-01-2011 Evangelos
Probing the Radiative Transition of Single Molecules with a Tunable Microresonator. Alexey I. Chizhik, Anna M. Chizhik, Dmitry Khoptyar, Sebastian Br, Alfred J. Meixner, and Jrg Enderlein. Nano Lett. 2011, 11, 1700-1703. Oct-4-2012 Stefan
Promoting the Growth of Mung Bean Plants through Uptake and Light Conversion of NaYF4:Yb,Er@CDs Nanocomposites. Xiaokai Xu, Wei Li, Chaofan Hu, Bingfu Lei, Xuejie Zhang, Yadong Li, Qiuqiang Zhan, Yingliang Liu, and Jianle Zhuang. ACS Sustainable Chem. Eng. 2020, 8, 9751-9762. Aug-27-2020 Lucía
Protein Oligomerization Monitored by Fluorescence Fluctuation Spectroscopy: Self-Assembly of Rubisco Activase. Manas Chakraborty, Agnieszka M. Kuriata, J. Nathan Henderson, Michael E. Salvucci, Rebekka M. Wachter, and Marcia Levitus. Biophysical Journal Volume 103 September 2012 949-958. Oct-25-2012 Jerker
Protein-binding dynamics imaged in a living cell. Yael Phillip, Vladimir Kiss, and Gideon Schreiber. PNAS 2012 in press. Mar-29-2012 Evangelos
Pulling on single molecules. Natalie de Souza. Nature methods vol.9 no.9 September 2012: 873-877. Oct-25-2012 Jerker
Pulsed Interleaved MINFLUX. Luciano A. Masullo, Florian Steiner, Jonas Zähringer, Lucía F. Lopez, Johann Bohlen, Lars Richter, Fiona Cole, Philip Tinnefeld, and Fernando D. Stefani. Nano Lett. 2021, 21, 1, 840-846. Jan-28-2021 Chinmaya
Puromycin Analogues Capable of Multiplexed Imaging and Profiling of Protein Synthesis and Dynamics in Live Cells and Neurons. Jingyan Ge, Cheng-Wu Zhang, Xue Wen Ng, Bo Peng, Sijun Pan, Shubo Du, Danyang Wang, Lin Li, Kah-Leong Lim, Thorsten Wohland, and Shao Q. Yao. Angew. Chem. Int. Ed. 2016, 55, 4933-4937. Apr-07-2018 Brant
Quantification of Fluorophore Copy Number from Intrinsic Fluctuations during Fluorescence Photobleaching. Chitra R. Nayak and Andrew D. Rutenberg. Biophysical Journal Volume 101 2011: 2284-2293. Dec-01-2011 Evangelos
Quantifying Lipid Diffusion by Fluorescence Correlation Spectroscopy: A Critical Treatise. Fabian Heinemann, Viktoria Betaneli, Franziska A. Thomas, and Petra Schwille. Langmuir 2012, 28, 13395-13404. Nov-29-2012 Stefan
Quantifying reversible surface binding via surface-integrated FCS. Jonas Mcksch, Philipp Blumhardt, Maximilian T. Strauss, Eugene P Petrov, Ralf Jungmann, and Petra Schwille. Nano Lett., Just Accepted Manuscript, DOI: 10.1021/acs.nanolett.8b00875. Apr-19-2018 Joachim
Quantifying spatial and temporal variations of the cell membrane ultrastructure by bimFCS. Weixiang Jin, M. Fethullah Simsek, Arnd Pralle. Methods (2018), https://doi.org/10.1016/j.ymeth.2018.02.019. Apr-19-2018 Joachim
Quantitative fluorescence labeling of aldehyde-tagged proteins for single-molecule imaging. Xinghua Shi, Yonil Jung, Li-Jung Lin, Cheng Liu, Cong Wu, Isaac K O Cann & Taekjip Ha. Nature methods 2012 vol.9 no.5 499-506. May-31-2012 Jerker
Quantitative imaging of membrane lipid order in cells and organisms. Dylan M Owen1, Carles Rentero, Astrid Magenau, Ahmed Abu-Siniyeh & Katharina Gaus. Nature protocols 2012 Vol.7 no 1: 24. Jan-19-2012 Jonas
Quantum Correlation Between Distant Diamonds. L.-M. Duan, Science Vol. 334: 1213-4 (2011). Dec-08-2011 Stefan
Quantum enhanced kHz gravitational wave detector with internal squeezing. V B Adya, M J Yap, D Töyrä, T G McRae, P A Altin, L K Sarre, M Meijerink2, N Kijbunchoo, B J J Slagmolen, R L Ward and D E McClelland. Class. Quantum Grav. 37 (2020) 07LT02. May-05-2022 Vaishali
Quantum-enhanced nonlinear microscopy. Catxere A. Casacio, Lars S. Madsen, Alex Terrasson, Muhammad Waleed, Kai Barnscheidt, Boris Hage, Michael A. Taylor & Warwick P. Bowen. Nature Vol 594 10 June 2021 201 Nov-04-2021 Katia
Quantum Sensing with Squeezed Light. B. J. Lawrie, P. D. Lett, A. M. Marino, and R. C. Pooser. ACS Photonics 2019, 6, 1307-1318. Aug-15-2019 Katia
Radiationless deactivation of hybridization-sensitive DNA probe. Hyo-Sup Shin, Akimitsu Okamoto, Yasushi Sako, Sok Won Kim, Soo Yong Kim, Chan-Gi Pack. Journal of Luminescence 132 (2012) 2566-2571. Feb-14-2013 Jerker
Rapid Analysis of Cell-Nanoparticle Interactions using Single-Cell Raman Trapping Microscopy. Maria Steinke, Florian Zunhammer, Elisavet I. Chatzopoulou, Henrik Teller, Karin Schtze, Heike Walles, Joachim O. Rdler, and Cordula Grttner. Angew. Chem. Int. Ed. 2018, 57, 4946-4950. May-3-2018 Saptaswa
Rapid Perturbation of Free-Energy Landscapes: From In Vitro to In Vivo. Hannah Gelman, Max Platkov, and Martin Gruebele. DOI: 10.1002/chem.201104047, Chem. Eur. J. 2012, 18, 6420-6427. Jan-31-2013 Evangelos
RapidSTORM: accurate, fast open-source software for localization microscopy. Steve Wolter, Anna Lschberger, Thorge Holm, Sarah Aufmkolk, Marie-Christine Dabauvalle, Sebastian van de Linde & Markus Sauer. Nature Methods vol.9 no.11 November 2012: 1040-1. Nov-08-2012 Lei
Reaction Mechanism of Photoinduced Decarboxylation of the Photoactivatable Green Fluorescent Protein: An ONIOM(QM:MM) Study. Lina Ding, Lung Wa Chung, and Keiji Morokuma. J. Phys. Chem. B 2013, in print. dx.doi.org/10.1021. Jan-24-2013 Thiemo
Recent research on stimulated emission depletion microscopy for reducing photobleaching. C. Li, S. Liu, W. Wang, W. Liu, C. Kuang, & X. Liu. Journal of Microscopy, Vol. 00, Issue 0 2018, pp. 1-13. Apr-19-2018 Joachim
Redox-based reagents for chemoselective methionine bioconjugation. Shixian Lin, Xiaoyu Yang, Shang Jia, Amy M. Weeks, Michael Hornsby, Peter S. Lee, Rita V. Nichiporuk, Anthony T. Iavarone, James A. Wells, F. Dean Toste, Christopher J. Chang. Science 355 , 597-602 (2017). Mar-10-2017 Joachim
Removing the Obstacle of Dye-Sensitized Upconversion Luminescence in Aqueous Phase to Achieve High-Contrast Deep Imaging In Vivo. Tao Liang, Qirong Wang, Zhen Li, Peipei Wang, Junjie Wu, Miaomiao Zuo, and Zhihong Liu. Adv. Funct. Mater. 2020, DOI: 10.1002/adfm.201910765. June-11-2020 Uliana
Reprogramming of proline and glutamine metabolism contributes to the proliferative and metabolic responses regulated by oncogenic transcription factor c-MYC. Wei Liu,, Anne Le, Chad Hancock, Andrew N. Lane, Chi V. Dange, Teresa W.-M. Fan, and James M. Phanga. PNAS June 5, 2012 vol. 109 no. 23 8983-8988. Jun-07-2012 Thiemo
Reorganization of Lipid Diffusion by Myelin Basic Protein as Revealed by STED Nanoscopy. Olena Steshenko, Debora M. Andrade, Alf Honigmann, Veronika Mueller, Falk Schneider, Erdinc Sezgin, Stefan W. Hell, Mikael Simons, and Christian Eggeling. Biophysical Journal 110, 2441-2450, June 7, 2016. Jun-17-2016 Joachim
Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy. Andrew G York, Sapun H Parekh, Damian Dalle Nogare, Robert S Fischer, Kelsey Temprine, Marina Mione, Ajay B Chitnis, Christian A Combs & Hari Shroff. Nature Methods (2012) doi:10.1038/nmeth.2025. Oct-11-2012 Vova
Respective contributions of single and compound granule fusion to secretion by activated platelets. Anita Eckly, Jean-Yves Rinckel, Fabienne Proamer, Neslihan Ulas, Smita Joshi, Sidney W. Whiteheart, and Christian Gachet. Blood, 24 November 2016 x Volume 128, number 21, 2538-2549. May-16-2018 Miao
Revealing protein oligomerization and densities in situ using spatial intensity distribution analysis. Antoine G. Godin, Santiago Costantino, Louis-Etienne Lorenzo, Jody L. Swift, Mikhail Sergeev, Alfredo Ribeiro-da-Silva, Yves De Koninck, and Paul W. Wiseman. PNAS 2011, vol. 108, no. 17:7010-7015. Oct-4-2012 Stefan
Rotational and Translational Diffusion of Peptide-Coated CdSe/CdS/ZnS Nanorods Studied by Fluorescence Correlation Spectroscopy. James M. Tsay, Sren Doose, and Shimon Weiss. J. Am. Chem. Soc. 2006, 128, 1639-1647. May-23-2013 Stefan
Retire statistical significance. Valentin Amrhein, Sander Greenland, Blake McShane and more than 800 signatories. Nature 21 March 2019 Vol 567, pages:283, 305-307. Apr-04-2019 Joachim
Repurposing Cyanine NIR-I Dyes Accelerates Clinical Translation of Near-Infrared-II (NIR-II) Bioimaging. Shoujun Zhu, Zhubin Hu, Rui Tian, Bryant C. Yung, Qinglai Yang, Su Zhao, Dale O. Kiesewetter, Gang Niu, Haitao Sun, Alexander L. Antaris, and Xiaoyuan Chen. Adv.Mater.2018, 30, 1802546. Apr-7-2022 Jerker
Selective thiolation and photoswitching mechanism of Cy5 studied by time-dependent density functional theory. Eunhak Lim, Jiwoong Kwon, Jaewan Park, Jiyoung Heo and Seong Keun Kim. Phys. Chem. Chem. Phys., 2020, 22, 14125. Apr-7-2022 Jerker
Self-organizing actin patterns shape membrane architecture but not cell mechanics. M. Fritzsche, D. Li, H. Colin-York, V.T. Chang, E. Moeendarbary, J.H. Felce, E. Sezgin, G. Charras, E. Betzig & C. Eggeling. Nature Communications 8 2017:14347, DOI: 10.1038/ncomms14347. Mar-10-2017 Joachim
Self-Segregation of Myelin Membrane Lipids in Model Membranes. Larisa Yurlova, Nicoletta Kahya, Shweta Aggarwal, Hermann-Josef Kaiser, Salvatore Chiantia, Mostafa Bakhti, Yael Pewzner-Jung,k Oshrit Ben-David,k Anthony H. Futerman,k Britta Brgger and Mikael Simons. Biophysical Journal Volume 101 December 2011: 2713-2720. Jan-12-2012 Vova
Sharper low-power STED nanoscopy by time gating. Giuseppe Vicidomini, Gael Moneron1, Kyu Y Han, Volker Westphal, Haisen Ta, Matthias Reuss, Johann Engelhardt, Christian Eggeling & Stefan W Hell. Nature methods Vol.8 No.7 July 2011: 571-574. Jan-26-2012 Daniel
Simultaneous, accurate measurement of the 3D position and orientation of single molecules. Mikael P. Backlunda, Matthew D. Lewa, Adam S. Backer, Steffen J. Sahl, Ginni Grover, Anurag Agrawal, Rafael Piestund, and W. E. Moerner. PNAS November 20 2012 vol. 109 no. 47, 19087-19092. Feb-14-2013 Jerker
Simultaneous Measurement of Ionic Current and Fluorescence from Single Protein Pores. Andrew J. Heron, James R. Thompson, Brd Cronin, Hagan Bayley, and Mark I. Wallace. J. AM. CHEM. SOC. 2013, in print. 10.1021/ja808128s. Jan-31-2013 Stefan
Single Cell Analysis of Ligand Binding and Complex Formation of Interleukin-4 Receptor Subunits. Thomas Weidemann, Remigiusz Worch, Kristina Kurgonaite, Martin Hintersteiner, Christian Bokel, and Petra Schwille. Biophysical Journal Volume 101 November 2011:2360-2369. Dec-15-2011 Sofia
Single molecule fluorescence correlation spectroscopy of single apoptotic cells using a red-fluorescent caspase probe. Meicong Dong, Michelle M. Martinez, Michael F. Mayer and Dimitri Pappas. Analyst 2012 View Online, DOI: 10.1039/c2an16173g. Feb-22-2012 Thiemo
Single-color Fluorescence Lifetime Cross-Correlation Spectroscopy in vivo. Martin Stefl, Konrad Herbst, Marc Rübsam, Ales Benda and Michael Knop. Biophys Journal 2020 in press. Sep-10-2020 Per
Single-Image Diffusion Coefficient Measurements of Proteins in Free Solution. Shannon Kian Zareh, Michael C. DeSantis, Jonathan M. Kessler, Je-Luen Li, and Y. M. Wang. Biophysical Journal Volume 102 April 2012 1685-1691. May-10-2012 Jonas
Single-Molecule Analysis of the Supramolecular Organization of the M2 Muscarinic Receptor and the Gi1 Protein. Rabindra V. Shivnaraine, Dennis D. Fernandes, Huiqiao Ji, Yuchong Li, Brendan Kelly, Zhenfu Zhang, Yi Rang Han, Fei Huang, Krishana S. Sankar, David N. Dubins, Jonathan V. Rocheleau, James W. Wells, and Claudiu C. Gradinaru. J. Am. Chem. Soc. 2016, 138, 11583-11598. Apr-07-2018 Brant
Single-molecule assays for investigating protein misfolding and aggregation. Armin Hoffmann, Krishna Neupane and Michael T. Woodside. Phys. Chem. Chem. Phys., 2013, 15, 7934-7948. Mar-03-2014 Per
Single-Molecule Fluorescence Imaging in Living Cells. Tie Xia, Nan Li, and Xiaohong Fang. Annu. Rev. Phys. Chem. 2013. 64:459-80. Jan-24-2013 Thiemo
Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins. Madeleine B. Borgia, Alessandro Borgia, Robert B. Best, Annette Steward, Daniel Nettels, Bengt Wunderlich, Benjamin Schuler & Jane Clarke. Nature Vol 474 2011: 662-666. Dec-08-2011 Stefan
Single-molecule localization microscopy and tracking with red-shifted states of conventional BODIPY conjugates in living cells. Santosh Adhikari, Joe Moscatelli, Elizabeth M. Smith, Chiranjib Banerjee & Elias M. Puchner. Nature Communications (2019)10:3400. Oct-24-2019 Jerker
Single-Molecule Study of Redox Reaction Kinetics by Observing Fluorescence Blinking. Kiyohiko Kawai, Mamoru Fujitsuka, and Atsushi Maruyama. Acc. Chem. Res. 2021, 54, 4, 1001-1010. Mar-11-2021 Niusha
Single-molecule visualization of DNA G-quadruplex formation in live cells. Marco Di Antonio, Aleks Ponjavic, Antanas Radzevicius, Rohan T. Ranasinghe, Marco Catalano, Xiaoyun Zhang, Jiazhen Shen, Lisa-Maria Needham, Steven F. Lee, David Klenerman and Shankar Balasubramanian. Nature Chemistry vol 12 September 2020 832-837. Dec-10-2020 Brant
Single-nanowire spectrometers. Zongyin Yang, Tom Albrow-Owen, Hanxiao Cui, Jack Alexander-Webber,Fuxing Gu, Xiaomu Wang, Tien-Chun Wu, Minghua Zhuge, Calum Williams,Pan Wang, Anatoly V. Zayats, Weiwei Cai, Lun Dai, Stephan Hofmann, Mauro Overend, Limin Tong, Qing Yang, Zhipei Sun, Tawfique Hasan. Science365, 1017-1020 (2019) Sep-22-2022 Alessandro
Single-wavelength two-photon excitation stimulated emission depletion (SW2PE-STED) superresolution imaging. Paolo Bianchini, Benjamin Harke, Silvia Galiani, Giuseppe Vicidomini, and Alberto Diaspro. PNAS Early Edition 1-4. May-24-2012 Daniel
Solid Immersion Facilitates Fluorescence Microscopy with Nanometer Resolution and Sub-ngstrm Emitter Localization. Dominik Wildanger, Brian R. Patton, Heiko Schill, Luca Marseglia, J. P. Hadden, Sebastian Knauer, Andreas Schnle, John G. Rarity, Jeremy L. O'Brien, Stefan W. Hell, and Jason M. Smith. Adv. Mater. 2012. Oct-19-2012 Daniel
Solvent Effect on Thermally Activated Delayed Fluorescence by 1,2,3,5-Tetrakis(carbazol-9-yl)-4,6-dicyanobenzene. Ryoichi Ishimatsu, Shigeyuki Matsunami, Katsuyuki Shizu, Chihaya Adachi, Koji Nakano, and Toshihiko Imato. J. Phys. Chem. A 2013, 117, 5607-5612. Mar-03-2014 Per
Spaser Nanoparticles for Ultranarrow Bandwidth STED Super‐Resolution Imaging. Zhaoshuai Gao, Jian-Hua Wang, Pei Song, Bin Kang, Jing-Juan Xu, Hong-Yuan Chen. Advanced Materials Volume 32, Issue 15 2020. Apr-16-2020 Chinmaya
Spatial control of membrane receptor function using ligand nanocalipers. Alan Shaw, Vanessa Lundin, Ekaterina Petrova, Ferenc Frds, Erik Benson, Abdullah Al-Amin, Anna Herland, Andries Blokzijl, Bjrn Hgberg & Ana I Teixeira. Nature methods 2014, doi:10.1038/nmeth.3025. May-20-2016 Lei
Spatially resolved, highly multiplexed RNA profiling in single cells. Kok Hao Chen, Alistair N. Boettiger, Jeffrey R. Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 24 April 2015 Vol 348 Issue 6233, p:6090-1-12. Jan-25-2018 Stefan
Spatially Resolved Scattering Correlation Spectroscopy Using a Total Internal Reflection Configuration. Heng Liu, Chaoqing Dong, Xiangyi Huang, and Jicun Ren. Anal. Chem. 2012, 84, 3561-3567. May-31-2012 Jerker
Spatiotemporal Visualization of Subcellular Dynamics of Carbon Nanotubes. Maged F. Serag, Kevin Braeckmans, Satoshi Habuchi, Noritada Kaji, Alberto Bianco, and Yoshinobu Baba. Nano Lett. 2012, 12, 6145-6151. Feb-14-2013 Jerker
splitSMLM, a spectral demixing method for high-precision multi-color localization microscopy applied to nuclear pore complexes. Leonid Andronov, Rachel Genthial, Didier Hentsch & Bruno P. Klaholz. Communications Biology (2022) 5:1100 https://doi.org/10.1038/s42003-022-04040-1 Nov-3-2022 Hanie
Spontaneously blinking fluorophores for accelerated MINFLUX nanoscopy. Michael Remmel, Lukas Scheiderer, Alexey N. Butkevich, Mariano L. Bossi, Stefan W. Hell. bioRxiv preprint doi: https://doi.org/10.1101/2022.08.29.505670. Nov-17-2022 Chinmaya
Squeezed light induced two-photon absorption fluorescence of fluorescein biomarkers. Tian Li, Fu Li, Charles Altuzarra, Anton Classen, and Girish S. Agarwal. Appl. Phys. Lett. 116, 254001 (2020); https://doi.org/10.1063/5.0010909 Apr-15-2021 Katia
Squeezing-enhanced Raman spectroscopy. Yoad Michael, Leon Bello, Michael Rosenbluh and Avi Pe'er. Nature Partner Jounal (2019) 81. Jan-30-2020 Niklas
STED nanoscopy with wavelengths at the emission maximum. Martn D Bordenave, Francisco Balzarotti, Fernando D Stefani, and Stefan W Hell.J. Phys. D: Appl. Phys. 49 (2016) 365102 (8pp). Nov-04-2016 Jan
STED with wavelengths closer to the emission maximum. Giuseppe Vicidomini, Gael Moneron, Christian Eggeling, Eva Rittweger, and Stefan W. Hell. OPTICS EXPRESS 27 February 2012 Vol. 20, No. 5 5225-2536. May-24-2012 Daniel
Stimulated Raman excited fluorescence spectroscopy and imaging. Hanqing Xiong, Lixue Shi, Lu Wei, Yihui Shen, Rong Long, Zhilun Zhao and Wei Min. Nature Photonics Vol 13 June 2019 412-417. Oct-24-2019 Jerker
Stimulated Raman Excited Fluorescence Spectroscopy of Visible Dyes. Hanqing Xiong, Naixin Qian, Yupeng Miao, Zhilun Zhao, and Wei Min. J. Phys. Chem. Lett. 2019, 10, 3563-3570. Oct-24-2019 Jerker
Stochastic Sensing of Single Molecules in a Nanofluidic Electrochemical Device. Marcel A. G. Zevenbergen, Pradyumna S. Singh, Edgar D. Goluch, Bernhard L. Wolfrum, and Serge G. Lemay. Nano Lett. 2011, 11, 2881-2886. Nov-08-2012 Lei
Structural Heterogeneity in the Collision Complex between Organic Dyes and Tryptophan in Aqueous Solution. Qinfang Sun, Rong Lu, and Anchi Yu. J. Phys. Chem. B 2012, 116, 660-666. Feb-22-2012 Thiemo
Structured illumination microscopy using a photonic chip. Øystein Ivar Helle, Firehun Tsige Dullo, Marcel Lahrberg, Jean-Claude Tinguely, Olav Gaute Hellesø & Balpreet S. Ahluwalia. Nature Photonics volume 14, pages 431-438 (2020). Nov-19-2020 Katia
Substrate-modulated gating dynamics in a Na+-coupled neurotransmitter transporter homologue. Yongfang Zhao, Daniel S. Terry, Lei Shi, Matthias Quick, Harel Weinstein, Scott C. Blanchard & Jonathan A. Javitch. Nature 2011 Vol. 474: 109-14. Dec-08-2011 Stefan
Sucrose Monoester Micelles Size Determined by Fluorescence Correlation Spectroscopy (FCS). Susana A. Sanchez, Enrico Gratton, Antonio L. Zanocco, Else Lemp, German Gunther. PLoS ONE Volume 6 Issue 12 e29278:1-6. Mar-08-2012 Per
Super resolution for common probes and common microscopes. Keith A Lidke. Nature methods vol.9 no.2 February 2012: 139. Feb-09-2012 Jerker
Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes. Sang-Hee Shim, Chenglong Xia, Guisheng Zhong, Hazen P. Babcock, Joshua C. Vaughan, Bo Huang, Xun Wang, Cheng Xu, Guo-Qiang Bi, and Xiaowei Zhuang. PNAS August 28, 2012 vol. 109 no. 35: 13978-13983. Nov-08-2012 Lei
Super-Resolution Imaging of C-Type Lectin and Influenza Hemagglutinin Nanodomains on Plasma Membranes Using Blink Microscopy. Michelle S. Itano, Christian Steinhauer, Jrgen J. Schmied, Carsten Forthmann, Ping Liu, Aaron K. Neumann, Nancy L. Thompson, Philip Tinnefeld, and Ken Jacobson. Biophysical Journal Volume 102 April 2012 1534,1542. May-24-2012 Daniel
Super-resolution Imaging of Energy Transfer by Intensity-Based STED-FRET. Alan M. Szalai, Bruno Siarry, Jerónimo Lukin, Sebastián Giusti, Nicolas Unsain, Alfredo Cáceres, Florian Steiner, Philip Tinnefeld, Damián Refojo, Thomas M. Jovin, and Fernando D. Stefani. Nano Lett. 2021, 21, 2296-2303. Jul-1-2021 Chinmaya
Super-resolution imaging prompts re-thinking of cell biology mechanisms: Selected cases using stimulated emission depletion microscopy. Sinem Saka and Silvio O. Rizzoli. Bioessays 34 2012 386-395. May-24-2012 Daniel
Supercritical angle fluorescence for enhanced axial sectioning in STED microscopy. Siddharth Sivankuttya, Ivn Coto Hernndez, Nicolas Bourga, Guillaume Dupuis, Sandrine Lveque-Forta. Methods Volume 174, 1 March 2020, Pages 20-26. May-07-2020 Jan
Super-resolution dipole orientation mapping viapolarization demodulationKarl Zhanghao, Long Chen, Xu-San Yang, Miao-Yan Wang, Zhen-Li Jing, Hong-Bin Han, Michael Q Zhang, Dayong Jin, Jun-Tao Gao, and Peng Xi. Light: Science & Applications (2016) 5,e16166. doi:10.1038/lsa.2016.1 Feb-03-2022 Chinmaya
Super-resolution vibrational microscopy by stimulated Raman excited fluorescence. Hanqing Xiong, Naixin Qian, Yupeng Miao, Zhilun Zhao, Chen Chen and Wei Min. Nature Light: Science & Applications (2021)10:87 Jun-03-2021 Haichun
Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells. Mudalige S. Gunewardene, Fedor V. Subach, Travis J. Gould, Gregory P. Penoncello, Manasa V. Gudheti, Vladislav V. Verkhusha, and Samuel T. Hess. Biophysical Journal Volume 101 2011 1522-28. Dec-01-2011 Evangelos
Superresolution Microscopy on the Basis of Engineered Dark States. Christian Steinhauer, Carsten Forthmann, Jan Vogelsang, and Philip Tinnefeld. J. Am. Chem. Soc. 2008, 130, 16840-16841. May-24-2012 Daniel
Superresolution Microscopy with Quantum Emitters. Osip Schwartz, Jonathan M. Levitt, Ron Tenne, Stella Itzhakov, Zvicka Deutsch, and Dan Oron. Nano Lett. in press. Nov-29-2013 Lei
Superresolved multiphoton microscopy with spatial frequency-modulated imaging. Jeffrey J. Field, Keith A. Wernsing, Scott R. Domingue, Alyssa M. Allende Motz, Keith F. DeLuca, Dean H. Levi, Jennifer G. DeLuca, Michael D. Young, Jeff A. Squier, and Randy A. Bartels. PNAS June 14, 2016 vol. 113 no. 24 6605-6610. Jun-17-2016 Joachim
Superresolving Dendritic Spines. Leslie M. Loew and Stefan W. Hell. Biophysical Journal Volume 104 February 2013 741-743. Mar-21-2013 Per
Surface-Enhanced Raman and Fluorescence Spectroscopy with an All-Dielectric Metasurface. Silvia Romano, Gianluigi Zito, Stefano Manago, Giuseppe Calafiore, Erika Penzo, Stefano Cabrini, Anna Chiara De Luca, and Vito Mocella. Apr-22-2021 Alessandro
Surface Plasmon Resonance Sensors: Science and Technology. Optical Biosensors Technical Group. Webinar 10 October 2018. Mar-21-2019 Maryam
Synthesis of Multiring Fused 2-Pyridones via a Nitrene Insertion Reaction: Fluorescent Modulators of α-Synuclein Amyloid Formation. Pardeep Singh, Erik Chorell, K. Syam Krishnan, Tomas Kindahl, Jörgen Åden, Pernilla Wittung-Stafshede, and Fredrik Almqvist. Org. Lett. 2015, 17, 6194-6197. Jan-26-2023 Jerker
Synthesis, Assembly, and Applications of Hybrid Nanostructures for Biosensing. Shuaidi Zhang, Ren Geryak, Jeffrey Geldmeier, Sunghan Kim, and Vladimir V. Tsukruk. Chem. Rev. 2017, 117, 12942-13038. May-31-2018 Katia
Systematic Tuning of Rhodamine Spirocyclization for Super- resolution Microscopy. Nicolas Lardon, Lu Wang, Aline Tschanz, Philipp Hoess, Mai Tran, Elisa D'Este, Jonas Ries, and Kai Johnsson. J. Am. Chem. Soc. 2021, 143, 14592-14600. Sep-16-2021 Joachim
Taking nanoscopy to the limit. Rita Strack. Nature Methods Vol.14 no.3 March 2017, page 221. Mar-10-2017 Joachim
Temperature dependence of protein folding kinetics in living cells. Minghao Guo, Yangfan Xu, and Martin Gruebele. PNAS Early Edition 2012. Jun-14-2012 Per
Tempo-Spatially Resolved Scattering Correlation Spectroscopy under Dark-Field Illumination and Its Application to Investigate Dynamic Behaviors of Gold Nanoparticles in Live Cells. Heng Liu, Chaoqing Dong, and Jicun Ren. J. Am. Chem. Soc. 2014, 136, 2775-2785. Apr-25-2014 Stefan
The development of direct multicolour fluorescence cross-correlation spectroscopy: Towards a new tool for tracking complex biomolecular events in real-time. Holly M. Wobma, Megan L. Blades, Ekaterina Grekova, Dylan L. McGuire, Kun Chen, Warren C. W. Chan and David T. Cramb. Phys. Chem. Chem. Phys., 2012, 14, 3290-3294. Mar-08-2012 Per
The Detection of Nanoscale Membrane Bending with Polarized Localization Microscopy. Abir M. Kabbani and Christopher V. Kelly. Biophysical Journal 113 Oct 2017, 1782-1794. Oct-27-2017 Per
The Effect of Trehalose Coating for Magnetite Nanoparticles on Stability of Egg White Lysozyme. Asma Lajmorak, Seyyed Ali Seyyed Ebrahimi, Fatemeh Yazdian, Zahra Lalegani and Bejan Hamawandi. Int. J. Mol. Sci. 2022, 23, 9657. https://doi.org/10.3390/ijms23179657 Sep-29-2022 Per
The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis. Ewa Pol. J Visual Exp Gen Elect. March 2010 37, e1746, 1-8. May-23-2013 Stefan
The ribosome uses two active mechanisms to unwind messenger RNA during translation. Xiaohui Qu1, Jin-Der Wen, Laura Lancaster, Harry F. Noller, Carlos Bustamante & Ignacio Tinoco Jr. Nature Vol 475 2011: 118-121. Dec-08-2011 Stefan
The Role of Lipids in VDAC Oligomerization. Viktoria Betaneli, Eugene P. Petrov, and Petra Schwille. Biophysical Journal Volume 102 February 2012 523-531. Mar-08-2012 Per
The Specific Monomer/Dimer Equilibrium of the Corticotropin-releasing Factor Receptor Type 1 Is Established in the Endoplasmic Reticulum. Anke Teichmann, Arthur Gibert, Andr Lampe, Paul Grzesik, Claudia Rutz, Jens Furkert, Jan Schmoranzer, Gerd Krause, Burkhard Wiesner, and Ralf Schlein. The Journal of Biological Chemistry Vol. 289, NO. 35, pp. 24250-24262. Feb-27-2017 Stefan
The promise and peril of deep learning in microscopy. David P. Ho man, Isaac Slavitt and Casey A. Fitzpatrick. Nature Methods VOL 18 February 2021 131-132. Feb-02-2021 Joachim
The Spectroscopic Basis of Fluorescence Triple Correlation Spectroscopy. William K. Ridgeway, David P. Millar, and James R. Williamson. J. Phys. Chem. B 2012, 116, 1908-1919. Mar-08-2012 Per
Thermally reconfigurable quantum photonic circuits at telecom wavelength by femtosecond laser micromachining. Fulvio Flamini, Lorenzo Magrini, Adil S Rab, Nicolò Spagnolo, Vincenzo D'Ambrosio, Paolo Mataloni, Fabio Sciarrino, Tommaso Zandrini, Andrea Crespi, Roberta Ramponi and Roberto Osellame. Light: Science & Applications (2015) 4, e354; doi:10.1038/lsa.2015.127 Oct-7-2021 Ashraf
Thermodynamic Measurements of Bilayer Insertion of a Single Transmembrane Helix Chaperoned by Fluorinated Surfactants. Alexander Kyrychenko, Mykola V. Rodnin, Yevgen O. Posokhov, Andrea Holt, Bernard Pucci, J. Antoinette Killian and Alexey S. Ladokhin. J. Mol. Biol. (2012) 416, 328-334. Mar-08-2012 Per
Thermophoretic Detection of Exosomal microRNAs by Nanoflares. Junxiang Zhao, Chao Liu, Yike Li, Yao Ma, Jinqi Deng, Lele Li, and Jiashu Sun. J. Am. Chem. Soc. 2020, 142, 4996-5001. Sep-17-2020 Brant
Three-Dimensional, Tomographic Super-Resolution Fluorescence Imaging of Serially Sectioned Thick Samples. Siddharth Nanguneri, Benjamin Flottmann, Heinz Horstmann, Mike Heilemann, Thomas Kuner. PLoS ONE, 1 May 2012, Volume 7, Issue 5, e38098. Jun-14-2012 Per
Three dimensional parallelized RESOLFT nanoscopy for volumetric live cell imaging. Andreas Bodn, Francesca Pennacchietti, Ilaria Testa. bioRxiv Jan 9 2020. Mar-05-2020 Per
Toward in Vivo Imaging of Heart Disease Using a Radiolabeled Single-Chain Fv Fragment Targeting Tenascin-C. Norihiro Kobayashi, Kenichi Odaka, Tomoya Uehara, Kyoko Imanaka-Yoshida, Yoshinori Kato, Hiroyuki Oyama, Hiroyuki Tadokoro, Hiromichi Akizawa, Shuji Tanada, Michiaki Hiroe, Toshimitsu Fukumura, Issei Komuro, Yasushi Arano, Toshimichi Yoshida, and Toshiaki Irie. Anal. Chem. 2011, 83: 9123-9130. Dec-15-2011 Sofia
Tracking protein aggregation and mislocalization in cells with flow cytometry. Yasmin M Ramdzan, Saskia Polling, Cheryl P Z Chia, Ivan H W Ng, Angelique R Ormsby, Nathan P Croft, Anthony W Purcell, Marie A Bogoyevitch, Dominic C H Ng, Paul A Gleeson & Danny M Hatters. Nature methods 2012 Vol.9 no.5 467-472. May-31-2012 Jerker
Transient Nanoscopic Phase Separation in Biological Lipid Membranes Resolved by Planar Plasmonic Antennas. Pamina M. Winkler, Raju Regmi, Valentin Flauraud, Jrgen Brugger, Herv Rigneault, Jrome Wenger, and Mara F. Garca-Parajo. ACS Nano 2017, 11, 7241-7250. DOI: 10.1021/acsnano.7b03177. Jan-25-2018 Stefan
Triplet Shelving in Fluorescein and Its Derivatives Provides Delayed, Background-Free Fluorescence Detection. Aida A. Demissie and Robert M. Dickson. J. Phys. Chem. A 2020, 124, 7, 1437-1443. https://doi.org/10.1021/acs.jpca.9b11040 Mar-24-2020 Jerker
Tumor cell differentiation by label-free fluorescence microscopy. Petra Weber, Michael Wagner, Petra Kioschis, Waltraud Kessler, and Herbert Schneckenburger. Journal of Biomedical Optics 17(10), 101508 (5 pages October 2012) Jun-21-2012 Lei
Tunable Blinking Kinetics of Cy5 for Precise DNA Quantification and Single-Nucleotide Difference Detection. Hsin-Chih Yeh, Christopher M. Puleo, Yi-Ping Ho, Vasudev J. Bailey, Teck Chuan Lim, Kelvin Liu and Tza-Huei Wang. Biophysical Journal Volume 95 July 2008 729-737. Feb-14-2013 Jerker
Tunable Three-Dimensional Plasmonic Arrays for Large Near-Infrared Fluorescence Enhancement. Jing S. Pang, Ioannis G. Theodorou, Anthony Centeno, Peter K. Petrov, Neil M. Alford, Mary P. Ryan, and Fang Xie. ACS Appl. Mater. Interfaces 2019, 11, 23083-23092. Dec-19-2019 Elin
Two types of luminescence blinking revealed by spectroelectrochemistry of single quantum dots. Christophe Galland, Yagnaseni Ghosh, Andrea Steinbruck, Milan Sykora, Jennifer A. Hollingsworth, Victor I. Klimov & Han Htoon. Nature 10 November 2011 Vol 479: 203-208. Jan-12-2012 Vova
Two-colour live-cell nanoscale imaging of intracellular targets. Francesca Bottanelli, Emil B. Kromann, Edward S. Allgeyer, Roman S. Erdmann, Stephanie Wood Baguley, George Sirinakis, Alanna Schepartz, David Baddeley, Derek K. Toomre, James E. Rothman, & Joerg Bewersdorf. Nature Communications 7:10778, 5 pages, DOI: 10.1038/ncomms10778. Nov-04-2016 Jan
Two-Photon Excitation STED Microscopy in Two Colors in Acute Brain Slices. Philipp Bethge, Ronan Chereau, Elena Avignone, Giovanni Marsicano, and U. Valentin Nagerl. Biophysical Journal Volume 104 February 2013 778-785. Mar-21-2013 Per
Two-photon excitation of the fluorescent nucleobase analogues 2-AP and tC. R. S. K. Lane and S. W. Magennis. RSC Advances, 2012, 2, 11397-11403, DOI: 10.1039/c2ra21881j. Jan-10-2013 Stefan
Two-photon light-sheet nanoscopy by fluorescence fluctuation correlation analysis. Xuanze Chen, Weijian Zong, Rongqin Li, Zhiping Zeng, Jia Zhao, Peng Xi, Liangyi Chen and Yujie Sun. Nanoscale, 2016, 8, 9982-9987. Jun-17-2016 Joachim
Ultra-High Resolution 3D Imaging of Whole Cells. Fang Huang, George Sirinakis, Edward S. Allgeyer, Lena K. Schroeder, Whitney C. Duim, Emil B. Kromann, Thomy Phan, Felix E. Rivera-Molina, Jordan R. Myers, Irnov Irnov, Mark Lessard, Yongdeng Zhang, Mary Ann Handel, Christine Jacobs-Wagner, C. Patrick Lusk, James E. Rothman, Derek Toomre, Martin J. Booth, and Joerg Bewersdorf. Cell 166, 1028-1040, August 11, 2016. Nov-04-2016 Jan
Ultra-photostable DNA FluoroCubes: Mechanism of Photostability and Compatibility with FRET and Dark Quenching. Aaron T. Blanchard, Zi Li, Elizabeth C. Duran, Catherine E. Scull, J. Damon Hoff, Keenan R. Wright, Victor Pan, and Nils G. Walter. Nano Lett. 2022, 22, 6235-6244. Dec-01-2022 Joachim
Ultra-Wideband Multi-Dye-Sensitized Upconverting Nanoparticles for Information Security Application. Jongha Lee, Byeongjun Yoo, Hakyong Lee, Gi Doo Cha, Hee-Su Lee, Youngho Cho, Sang Yeon Kim, Hyunseon Seo, Woongchan Lee, Donghee Son, Myungjoo Kang, Hyung Min Kim, Yong Il Park, Taeghwan Hyeon, and Dae-Hyeong Kim. Adv. Mater 2017, 29, 1603169. Feb-06-2020 Lucía
Ultrabright photoactivatable fluorophores created by reductive caging. Joshua C Vaughan, Shu Jia, & Xiaowei Zhuang. Nature Methods published online 28 October 2012: 7 pages. Nov-08-2012 Lei
Ultrafast photochemistry produces superbright short-wave infrared dots for low-dose in vivo imaging. Harrisson D. A. Santos, Irene Zabala Gutiérrez, Yingli Shen, José Lifante, Erving Ximendes, Marco Laurenti, Diego Méndez-González, Sonia Melle, Oscar G. Calderón, Enrique López Cabarcos, Nuria Fernández, Irene Chaves-Coira, Daniel Lucena-Agell, Luis Monge, Mark D. Mackenzie, José Marqués-Hueso, Callum M. S. Jones Carlos Jacinto, Blanca del Rosal, Ajoy K. Kar, Jorge Rubio-Retama & Daniel Jaque. Nature Communications (2020)11:2933. https://doi.org/10.1038/s41467-020-16333-2. Sep-24-2020 Baris
Ultralong-Range Polaron-Induced Quenching of Excitons in Isolated Conjugated Polymers. Joshua C. Bolinger, et al. Science Vol. 331 2011: 565-8. Dec-08-2011 Stefan
Ultrasensitive Surface Refractive Index Imaging Based on Quasi-Bound States in the Continuum. Silvia Romano, Maria Mangini, Erika Penzo, Stefano Cabrini, Anna Chiara De Luca, Ivo Rendina, Vito Mocella, and Gianluigi Zito. ACS Nano 2020, 14, 15417-15427. Apr-22-2021 Alessandro
Ultraviolet optical horn antennas for label-free detection of single proteins. Aleksandr Barulin, Prithu Roy, Jean-Benoît Claude & Jérôme Wenger. Nature communications (2022) 13:1842 https://doi.org/10.1038/s41467-022-29546-4 . Apr-09-2020 Bariş
Ultraviolet Photostability Improvement for Autofluorescence Correlation Spectroscopy on Label-Free Proteins. Aleksandr Barulin and Jrome Wenger. J. Phys. Chem. Lett. 2020, 11, 2027-2035. https://dx.doi.org/10.1021/acs.jpclett.0c00209 Apr-09-2020 Bariş
Unraveling the hidden temporal range of fast β2-adrenergic receptor mobility by time-resolved fluorescence. Ashwin Balakrishnan, Katherina Hemmen, Susobhan Choudhury, Jan-Hagen Krohn, Kerstin Jansen, Mike Friedrich, Gerti Beliu, Markus Sauer, Martin J. Lohse & Katrin G. Heinze. Communications Biology (2022)5:176 https://doi.org/10.1038/s42003-022-03106-4. Mar-03-2022 Joachim
Upconversion Cross-Correlation Spectroscopy of a Sandwich Immunoassay. Satu Lahtinen, Stefan Krause, Riikka Arppe, Tero Soukka, and Tom Vosch. Chem. Eur.J.2018, 24, 9229-9233. Oct-29-2020 Uliana
Upconversion Nonlinear Structured Illumination Microscopy. Baolei Liu, Chaohao Chen, Xiangjun Di, Jiayan Liao, Shihui Wen, Qian Peter Su, Xuchen Shan, Zai-Quan Xu, Lining Arnold Ju, Chao Mi, Fan Wang, and Dayong Jin. Nano Lett. 2020, 20, 4775-4781, Aug-27-2020 Lucía
Virtual-freezing fluorescence imaging flow cytometry. Hideharu Mikami, Makoto Kawaguchi, Chun-Jung Huang, Hiroki Matsumura, Takeaki Sugimura, Kangrui Huang, Cheng Lei, Shunnosuke Ueno, Taichi Miura, Takuro Ito1, Kazumichi Nagasawa, Takanori Maeno, Hiroshi Watarai, Mai Yamagishi, Sotaro Uemura, Shinsuke Ohnuki, Yoshikazu Ohya, Hiromi Kurokawa, Satoshi Matsusaka, Chia-Wei Sun, Yasuyuki Ozeki & Keisuke Goda. Nature Communications (2020) 11:1162 https://doi.org/10.1038/s41467-020-14929-2 Apr-09-2020 Bariş
Visualization of barriers and obstacles to molecular diffusion in live cells by spatial pair-cross-correlation in two dimensions. Leonel Malacrida, Per Niklas Hedde, Suman Ranjit, Francesco Cardarelli, and Enrico Gratton. Biomedical Optics Express 321 Vol. 9, No. 1, 1 Jan 2018. Aug-30-2018 Stefan
Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs. Xianjun Chen, Dasheng Zhang, Ni Su, Bingkun Bao, Xin Xie, Fangting Zuo, Lipeng Yang, Hui Wang, Li Jiang, Qiuning Lin, Mengyue Fang, Ningfeng Li, Xin Hua, Zhengda Chen, Chunyan Bao, Jinjin Xu, Wenli Du, Lixin Zhang, Yuzheng Zhao, Linyong Zhu, Joseph Loscalzo and Yi Yan. Nature Biotechnology Vol 37 November 2019, 1287-1293. Nov-21-2019 Brant
Visualizing the native cellular organization by coupling cryofixation with expansion microscopy (Cryo-ExM). Marine H. Laporte, Nikolai Klena, Virginie Hamel and Paul Guichard. Nature Methods vol 19 February 2022 216-222. Mar-03-2022 Joachim
Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Alexander Song, Adam S Charles, Sue Ann Koay, Jeff L, Gauthier, Stephan Y Thiberge, Jonathan W Pillow & David W Tank. Nature methods, advance online publication doi:10.1038/nmeth.4226. Mar-20-2017 Per
Whole-Cell, 3D, and Multicolor STED Imaging with Exchangeable Fluorophores. Christoph Spahn, Jonathan B. Grimm, Luke D. Lavis, Marko Lampe, and Mike Heilemann. Nano Lett. 2019, 19, 500-505. DOI: 10.1021/acs.nanolett.8b04385 Apr-11-2019 Chinmaya

Next person responsible for selecting interesting recent papers to be mentioned at the group meeting is (see also):

  1. Niusha
  2. Haichun
  3. Per
  4. Bariş
  5. Hanie
  6. Chinmaya
  7. Joachim
  8. Abhilash
  9. Jerker
UP www.biomolphysics.kth.se - per_at_biomolphysics_dot_kth_dot_se - January 26 2023 KTH