Experimental Biomolecular Physics Journal Club

Experimental Biomolecular Physics

Interesting Publications

The articles below have been discussed in the Experimental Biomolecular Physics Journal Club and can be downloaded from Y:\Articles\Exp.Biomol.Phys._JournalClub\ on rimfaxe (our local server) or here for local users.

PaperDisc. dateChairman
124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics. Orsolya K. Wade, Johannes B. Woehrstein, Philipp C. Nickels, Sebastian Strauss, Florian Stehr, Johannes Stein, Florian Schueder, Maximilian T. Strauss, Mahipal Ganji, Joerg Schnitzbauer, Heinrich Grabmayr, Peng Yin, Petra Schwille, and Ralf Jungmann. Nano Lett.2019, 19, 4, 2641-2646, DOI: 10.1021/acs.nanolett.9b00508 Jun-27-2019 Per
A fluorogenic probe for cell surface phosphatidylserine using an intramolecular indicator displacement sensing mechanism. Vincent E Zwicker, Bruno Oliveira, Jia Hao Yeo, Stuart Fraser, Goncalo Bernardes, Elizabeth J. New, and Katrina Jolliffe. Angew. Chem. Int. Ed. 10.1002/anie.201812489. Nov-29-2018 Saptaswa
A fluorescent membrane tension probe. Adai Colom, Emmanuel Derivery, Saeideh Soleimanpour, Caterina Tomba, Marta Dal Molin, Naomi Sakai, Marcos González-Gaitán, Stefan Matile and Aurélien Roux. Nature Chemistry Vol 10 November 2018 1118-1125. Jan-17-2019 Brant
A general approach to break the concentration barrier in single-molecule imaging. Anna B Loveland, Satoshi Habuchi, Johannes C Walter & Antoine M van Oijen. Nature methods 2012. Sep-20-2012
Nov-30-2012
Evangelos
Jerker
A general method to improve fluorophores for live-cell and single-molecule microscopy. Jonathan B Grimm, Brian P English, Jiji Chen, Joel P Slaughter, Zhengjian Zhang, Andrey Revyakin, Ronak Patel, John J Macklin, Davide Normanno, Robert H Singer, Timothe Lionnet & Luke D Lavis. Nature methods Vol.12 No.3: 244-253. Apr-16-2015 Vova
A guide to super-resolution fluorescence microscopy Lothar Schermelleh, Rainer Heintzmann, and Heinrich Leonhardt. J. Cell Biol. Vol. 190 No. 2: 165-175. Jan-26-2012 Daniel
A nanomechanical mass sensor with yoctogram resolution. J. Chaste, A. Eichler, J. Moser, G. Ceballos, R. Rurali and A. Bachtold. Nature Nanotechnology 2012 published online: 1 April 2012, DOI: 10.1038/NNANO.2012.42, 4 pages. Apr-19-2012 Stefan
A simple empirical algorithm for optimising depletion power and resolution for dye and system specific STED imaging. Christian A. Combs , Dan L. Sackett & Jay R. Knutson. Journal of Microscopy, Vol. 274, Issue 3 2019, pp. 168-176. Jun-20-2019 Jan
A thermodynamic definition of protein domains. Lauren L. Porter and George D. Rose. PNAS doi/10.1073. Jun-14-2012 Per
ACRONYM: Acronym CReatiON for You and Me. B. A. Cook. https://www.cfa.harvard.edu/~gpetitpas/Links/Astroacro.html Apr-11-2019 Chinmaya
Actin filaments attachment at the plasma membrane in live cells cause the formation of ordered lipid domains. Jelena Dinic, Parham Ashrafzadeh, Ingela Parmryd. Biochimica et Biophysica Acta 1828 (2013) 1102-1111. Apr-15-2016 Stefan
Adaptive optics for fluorescence correlation spectroscopy. Charles-Edouard Leroux, Iréne Wang, Jacques Derouard, and Antoine Delon. Optics Express Vol. 19, No. 27, 26839-26849. Mar-08-2012 Per
Aggregation Distributions on Cells Determined by Photobleaching Image Correlation Spectroscopy. Giuseppe D. Ciccotosto, Noga Kozer, Timothy T. Y. Chow, James W. M. Chon, and Andrew H. A. Clayton. Biophysical Journal Volume 104 March 2013 1056-1064. Mar-21-2013 Per
Aggregation and disaggregation of anionic aluminum phthalocyanines in cationic pre-micelle and micelle media: A fluorescence study.Raquel F. Correia, Suzana M. Andrade, M. Isabel Viseu. Journal of Photochemistry and Photobiology A: Chemistry 235 (2012) 21-28. Apr-26-2012 Vova
AMPK regulates NADPH homeostasis to promote tumour cell survival during energy stress. Sang-Min Jeon, Navdeep S. Chandel & Nissim Hay. Nature 2012 Vol 485 661-667. Jun-07-2012 Thiemo
An alternative way to use the triplet energy of fluorescent dyes in organic light-emitting devices via an external iodide. Xing Xing, Taiju Tsuboi, Yosuke Nakai, Fei Wang, Boyuan Qi, Zhijian Chen, Bo Qu, Lixin Xiao, Qihuang Gong. Organic Electronics 13 (2012) 195-198. Feb-22-2012 Thiemo
An FCS Study of Unfolding and Refolding of CPM-Labeled Human Serum Albumin: Role of Ionic Liquid. Dibyendu Kumar Sasmal, Tridib Mondal, Supratik Sen Mojumdar, Aparajita Choudhury, Rajat Banerjee, and Kankan Bhattacharyya. J. Phys. Chem. B 2011, 115, 13075-13083. Feb-22-2012 Thiemo
Analyses of Intravesicular Exosomal Proteins Using a Nano-Plasmonic System. Jongmin Park, Hyungsoon Im, Seonki Hong, Cesar M. Castro, Ralph Weissleder, and Hakho Lee. ACS Photonics 2018, 5, 487-494. May-31-2018 Katia
Anomalous subdiffusive measurements by fluorescence correlations spectroscopy and simulations of translational diffusive behavior in live cells. Gerd Baumann, Masataka Kinjo, and Zeno Fldes-Papp. Journal of Biological Methods 2014, Vol. 1, 1-9., DOI: 10.14440/jbm.2014.17. Apr-30-2015 Per
Annular Protofibrils Are a Structurally and Functionally Distinct Type of Amyloid Oligomer. Rakez Kayed, Anna Pensalfini, Larry Margol, Yuri Sokolov, Floyd Sarsoz, Elizabeth Head, James Hall, and Charles Glabe. The Journal of Biological Chemistry 2009 VOL. 284, no. 7, pp. 4230-4237. Apr-19-2012 Stefan
Analyzing the Homeostasis of Signaling Proteins by a Combination of Western Blot and Fluorescence Correlation Spectroscopy. Yi-Da Chung, Michael D. Sinzinger, Petra Bovee-Geurts, Marina Krause, Sip Dinkla, Irma Joosten, Werner J. Koopman, Merel J. W. Adjobo-Hermans, and Roland Brock. Biophysical Journal Volume 101 December 2011: 2807-2815 Jan-12-2012 Vova
Aptamers as potential tools for super-resolution microscopy. Felipe Opazo, Matthew Levy, Michelle Byrom, Christina Schäfer, Claudia Geisler, Teja W Groemer, Andrew D Ellington & Silvio O Rizzoli. nature methods Vol.9 No.10 October 2012:938-939. Oct-25-2012 Jerker
Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 1. Multidetector and Sub-Binning Approach. Farshad Abdollah-Nia, Martin P. Gelfand, and Alan Van Orden. J. Phys. Chem. B 2017, 121, 2373-2387. May-05-2017 Stefan
Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 2. Multidetector and Sub-Binning Approach. Farshad Abdollah-Nia, Martin P. Gelfand, and Alan Van Orden. J. Phys. Chem. B 2017, 121, 2388-2399. May-05-2017 Stefan
ATP-induced helicase slippage reveals highly coordinated subunits. Bo Sun, Daniel S. Johnson, Gayatri Patel, Benjamin Y. Smith, Manjula Pandey, Smita S. Patel & Michelle D. Wang. Nature Vol 478 2011: 132-136. Dec-08-2011 Stefan
Background suppression in fluorescence nanoscopy with stimulated emission double depletion. Peng Gao, Benedikt Prunsche, Lu Zhou, Karin Nienhaus and G. Ulrich Nienhaus. Nature Photonics VOL 11 March 2017, p: 163-170. Mar-31-2017 Elin
Bayesian localization microscopy reveals nanoscale podosome dynamics. Susan Cox, Edward Rosten, James Monypenny, Tijana Jovanovic-Talisman, Dylan T Burnette, Jennifer Lippincott-Schwartz, Gareth E Jones1 & Rainer Heintzmann. Nature methods Vol.9 no.2 February 2012: 195-200. Feb-09-2012 Jerker
Biological mechanisms, one molecule at a time Ignacio Tinoco, Jr and Ruben L. Gonzalez, Jr. Genes Dev. 2011 25: 1205-1231 Jan-19-2012 Jonas
Biological Imaging with Medium-Sensitive Bichromatic Flexible Fluorescent Dyes. Yang Cao, Xiaozhu Wang, Xiaolei Shi, Susanne M. Clee, Patrick L. McGeer, Michael O. Wolf, and Chris Orvig. Angew. Chem. Int. Ed. 2017, 56, 15603-15606 Dec-01-2017 Saptaswa
Biomechanics and biophysics of cancer cells. Subra Suresh. Acta Biomater. 2007 July ; 3(4): 413-438. Jan-26-2012 Daniel
Broken detailed balance at mesoscopic scales in active biological systems. Christopher Battle, Chase P. Broedersz, Nikta Fakhri, Veikko F. Geyer, Jonathon Howard, Christoph F. Schmidt, Fred C. MacKintosh. Science 29 April 2016, Vol 352 Issue 6285, 604-607. May-20-2016 Lei
Cadmium-Free Quantum Dots as Fluorescent Labels for Exosomes. Garima Dobhal, Deanna Ayupova, Geoffry Laufersky, Zeineb Ayed, Thomas Nann and Renee V. Goreham. Sensors 2018, 18, 3308; doi:10.3390/s18103308. Nov-29-2018 Saptaswa
Cell membrane modulation as adjuvant in cancer therapy. Sara Zalba, Timo L.M. ten Hagen. Cancer Treatment Reviews 52 (2017), 48-57. Apr-21-2017 Saptaswa
Cell-sized asymmetric lipid vesicles facilitate the investigation of asymmetric membranes. Koki Kamiya, Ryuji Kawano, Toshihisa Osaki, Kazunari Akiyoshi and Shoji Takeuchi. Nature Chemistry Vol 8 September 201, 881-890. Apr-21-2017 Saptaswa
Cell-surface sensors for real-time probing of cellular environments. Weian Zhao1, Sebastian Schafer1, Jonghoon Choi, Yvonne J. Yamanaka, Maria L. Lombardi, Suman Bose, Alicia L. Carlson, Joseph A. Phillips, Weisuong Teo, Ilia A. Droujinine, Cheryl H. Cui1, Rakesh K. Jain, Jan Lammerding, J. Christopher Love, Charles P. Lin, Debanjan Sarkar, Rohit Karnik and Jeffrey M. Karp. Nature nanotechnology vol 6 August 2011, 524-531. Mar-22-2012 Yang
Central dogma at the single-molecule level in living cells. Gene-Wei Li & X. Sunney Xie. Nature Vol. 475 2011: 308-315. Dec-01-2011
Dec-08-2011
Evangelos
Stefan
Challenges in long-term imaging and quantification of single-cell dynamics. Stavroula Skylaki, Oliver Hilsenbeck & Timm Schroeder. Nature biotechnology, volume 34 number 11 2016: 1137-1144. Nov-11-2016 Joachim
Characterization of Dark Quencher Chromophores as Nonfluorescent Acceptors for Single-Molecule FRET. Ludovic Le Reste, Johannes Hohlbein, Kristofer Gryte, and Achillefs N. Kapanidis. Biophysical Journal Volume 102 May 2012 2658-2668. Jun-07-2012 Thiemo
Characterization of the Triplet State of Hybridization-Sensitive DNA Probe by Using Fluorescence Correlation Spectroscopy. Hyo-Sup Shin, Akimitsu Okamoto, Yasushi Sako, Sok Won Kim, Soo Yong Kim, and Chan-Gi Pack. J. Phys. Chem. A 2013, 117, 27-33. Feb-14-2013 Jerker
Chemical Photocatalysis with Rhodamine 6G: Investigation of Photoreduction by Simultaneous Fluorescence Correlation Spectroscopy and Fluorescence Lifetime Measurements. Josef M. Haimerl, Indrajit Ghosh, Burkhard Konig, John M. Lupton, and Jan Vogelsang. J. Phys. Chem. B XXXX, XXX, XXX-XXX. Nov-29-2018 Saptaswa
Circular scanning fluorescence correlation spectroscopy on membranes. Zdenek Petrasek, Susan Derenko and Petra Schwille. Optics express December 2011 Vol. 19, No. 25: 25006-21. Jan-19-2012 Jonas
Clinical Measurement of von Willebrand Factor by Fluorescence Correlation Spectroscopy. Richard Torres, Jonathan R. Genzen, and Michael J. Levene1. Clinical Chemistry 58:6 1010-1018 (2012). Sep-20-2012 Evangelos
Compressive three-dimensional super-resolution microscopy with speckle-saturated fluorescence excitation. M. Pascucci, S. Ganesan, A. Tripathi, O. Katz, V. Emiliani & M. Guillon. Nature communications (2019)10:1327 https://doi.org/10.1038/s41467-019-09297-5 Apr-04-2019 Joachim
Coherent-hybrid STED: high contrast sub- diffraction imaging using a bi-vortex depletion beam António Pereira, Mafalda Sousa, Ana C. Almeida, luísa T. Ferreira, Ana Rita Costa, Marco Novais-Cruz, Cristina Ferrás, Mónica Mendes Sousa, Paula Sampaio, Michael Belsley, and Helder Maiato1. Optics Express Vol. 27, No. 6, 18 Mar 2019, 8092-8111. Jun-20-2019 Jan
Consequences of membrane topography. Ingela Parmryd and Björn Önfelt. FEBS Journal 280 (2013) 2775-2784. Apr-25-2014 Stefan
Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy. Jan Vogelsang, Thorben Cordes, Carsten Forthmann, Christian Steinhauer, and Philip Tinnefeld. PNAS May 19, 2009 vol. 106 no. 20 8107-8112. May-24-2012 Daniel
Correcting for Spectral Cross-Talk in Dual-Color Fluorescence Cross-Correlation Spectroscopy. Kirsten Bacia, Zdene Petrasek, and Petra Schwille. ChemPhysChem 2012, 13, 1221-1231. May-10-2012 Jonas
Correction of dichroic mirror-induced PSF distortion in STED microscopy. Yanghui Li, Hui Zhou, Xiaoyu Liu, Chengliang Xia & Le Wang. Journal of Modern Optics, 2018 VOL. 65, NO. 12, 1424-1430. May-24-2018 Niusha
Correlating Calcium Binding, Förster Resonance Energy Transfer, and Conformational Change in the Biosensor TN-XXL. Anselm Geiger, Luigi Russo, Thomas Gensch, Thomas Thestrup, Stefan Becker, Karl-Peter Hopfner, Christian Griesinger, Gregor Witte, and Oliver Griesbeck. Biophysical Journal Volume 102 May 2012 2401-2410. Jun-07-2012 Thiemo
Correlational Analysis of Proteins and Nonmetallic Nanoparticles in a Deep-Nulling Microscope. Michael Hilbert, Hendrik Hippchen, Axel Wehling, and Peter J. Walla. J. Phys. Chem. B 2005, 109, 18162-18170. Apr-19-2012 Stefan
Correlation-Matrix Analysis of Two-Color Coincidence Events in Single-Molecule Fluorescence Experiments. Idir Yahiatene, Sören Doose, Thomas Huser, and Markus Sauer. 2 American Chemical Society 2729 dx.doi.org/10.1021/ac2030283 Anal. Chem. 2012, 84, 2729-2736 May-10-2012 Jonas
Correlative nanomechanical profiling with super-resolution F-actin imaging reveals novel insights into mechanisms of cisplatin resistance in ovarian cancer cells. Shivani Sharma, Chintda Santiskulvong, Laurent A. Bentolila, JianYu Rao, Oliver Dorigo, James K. Gimzewski. Nanomedicine: Nanotechnology, Biology, and Medicine xx (2011): xxx-xxx. Jan-26-2012 Daniel
Covalent Ras Dimerization on Membrane Surfaces through Photosensitized Oxidation. Jean K. Chung, Young Kwang Lee, Hiu Yue Monatrice Lam, and Jay T. Groves. J. Am. Chem. Soc. 2016, 138, 1800-1803. Apr-07-2018 Brant
Current technologies for HER2 testing in breast cancer. C.B. Moelans, R.A. de Weger, E. Van der Wall, P.J. van Diest. Critical Reviews in Oncology/Hematology 80 (2011): 380-392. Jan-19-2012 Jonas
Cyanine fluorophore derivatives with enhanced photostability. Roger B Altman, Daniel S Terry, Zhou Zhou, Qinsi Zheng, Peter Geggier, Rachel A Kolster, Yongfang Zhao, Jonathan A Javitch, J David Warren & Scott C Blanchard. Nature methods, Vol.9 No.1 January 2012, 68-73. Mar-29-2012 Evangelos
Detection of Cancer-Cells in Prostate Tissue with Time-Resolved Fluorescence Spectroscopy. C.E. Gerich J. Opitz, M. Toma, M. Sergon, S. Füssel, R. Nanked, J. Fehre, M. Wirth, G. Baretton and J. Schreiber. Proc. of SPIE Vol. 7897: 78970R1-12. Jan-19-2012 Jonas
Detection of long-range electrostatic interactions between charged molecules by means of fluorescence correlation spectroscopy. Ilaria Nardecchia, Mathias Lechelon, Matteo Gori, Irene Donato, Jordane Preto, Elena Floriani, Sebastien Jaeger, Sebastien Mailfert, Didier Marguet, Pierre Ferrier, and Marco Pettini. Physical Review E 96, 022403:1-13 (2017). Nov-17-2017 Jerker
Determination of equilibrium and rate constants for complex formation by fluorescence correlation spectroscopy supplemented by dynamic light scattering and Taylor dispersion analysis. Xuzhu Zhang, Andrzej Poniewierski, Aldona Jelińska, Anna Zagoźdźon, Agnieszka Wisniewska, Sen Hou and Robert Holyst. Soft Matter, 2016, 12, 8186-8194. Nov-11-2016 Joachim
Determination of Equilibrium Constant and Relative Brightness in Fluorescence Correlation Spectroscopy by Considering Third-Order Correlations. Zhenqin Wu, Huimin Bi, Sichen Pan, Lingyi Meng, and Xin Sheng Zhao. J. Phys. Chem. B 2016, 120, 11674-11682. Feb-27-2017 Stefan
Determination of the mechanism of photo-ionization of NADH in aqueous solution on laser excitation at 355 nm. Lars Lindqvist, Barbara Czochralska and Ivan Grigorov. Chemical Physics Letters 1985 Volume 119, number 6, 494-498. Jan-24-2013 Thiemo
Development of new photon-counting detectors for single-molecule fluorescence microscopy. X. Michalet, R. A. Colyer, G. Scalia, A. Ingargiola, R. Lin, J. E. Millaud, S. Weiss, Oswald H. W. Siegmund, Anton S. Tremsin, John V. Vallerga, A. Cheng, M. Levi, D. Aharoni, K. Arisaka, F. Villa, F. Guerrieri, F. Panzeri, I. Rech, A. Gulinatti, F. Zappa, M. Ghioni and S. Cova. Phil. Trans. R. Soc. B 2013 368-390, 20120035, published online 24 December 2012 Feb-14-2013 Jerker
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP. Tim Grotjohann, Ilaria Testa, Marcel Leutenegger, Hannes Bock, Nicolai T. Urban, Flavie Lavoie-Cardinal, Katrin I. Willig, Christian Eggeling, Stefan Jakobs1, & Stefan W. Hell. Nature Vol 478 13 October 2011: 204-208. Jan-26-2012 Daniel
Diffraction-unlimited imaging: from pretty pictures to hard numbers. Wim Vandenberg, Marcel Leutenegger, Theo Lasser, Johan Hofkens, Peter Dedecker. Cell Tissue Res (2015) 360:151-178. Apr-30-2015 Per
Diffusion of Single-Pass Transmembrane Receptors: From the Plasma Membrane into Giant Liposomes. Remigiusz Worch, Zdenek Petrasek, Petra Schwille, Thomas Weidemann. J Membrane Biol DOI 10.1007/s00232-016-9936-8. Feb-27-2017 Stefan
Direct Detection of Radical Cations of NADH Analogues. Shunichi Fukuzumi, Osamu Inada, and Tomoyoshi Suenobu. J. Am. Chem. Soc. 2002, 124, 14538-14539. Jan-24-2013 Thiemo
Direct identification of ligand-receptor interactions on living cells and tissues. Andreas P Frei, Ock-Youm Jeon, Samuel Kilcher, Hansjoerg Moest, Lisa M Henning, Christian Jost, Andreas Plückthun, Jason Mercer, Ruedi Aebersold, Erick M Carreira & Bernd Wollscheid. nature biotechnology. Volume 30 Number 10 October 2012 997-1003. Oct-25-2012 Jerker
Direct Measurement of Association and Dissociation Rates of DNA Binding in Live Cells by Fluorescence Correlation Spectroscopy. Ariel Michelman-Ribeiro, Davide Mazza, Tilman Rosales, Timothy J. Stasevich, Hacene Boukari, Vikas Rishi, Charles Vinson, Jay R. Knutson, and James G. McNally. Biophysical Journal Volume 97 July 2009 337-346. Nov-29-2012 Stefan
Directionality of individual kinesin-5 Cin8 motors is modulated by loop 8, ionic strength and microtubule geometry. Adina Gerson-Gurwitz1, Christina Thiede, Natalia Movshovich, Vladimir Fridman, Maria Podolskaya, Tsafi Danieli, Stefan Lakamper, Dieter R Klopfenstein, Christoph F Schmidt, and Larisa Gheber. The EMBO Journal, Vol 30, No 24 2011: 4942-4954. Dec-15-2011 Sofia
DNA-Based Patterning of Tethered Membrane Patches. Laura D. Hughes and Steven G. Boxer. Langmuir 2013, 29, 12220-12227. May-20-2016 Lei
DNA flow injection through solid state nanopores. Thomas Auger. Master of Science Thesis at KTH 2013. Aug-15-2013 Jerker
DNA origami as biocompatible surface to match single-molecule and ensemble experiments. Andreas Gietl, Phil Holzmeister, Dina Grohmann and Philip Tinnefeld. Nucleic Acids Research, 2012, Vol. 40, No. 14: e110. Dec-08-2011 Stefan
Do Lipid Rafts Exist? Mitch Leslie. Science 2011 Vol. 334: 1046-7. Dec-08-2011 Stefan
Dual-objective storm reveals three-dimensional filament organization in the actin cytoskeleton. Ke Xu, Hazen P Babcock & Xiaowei Zhuang. Nature methods vol.9 no.2 February 2012: 185. Feb-09-2012 Jerker
Early Amyloidogenic Oligomerization Studied through Fluorescence Lifetime Correlation Spectroscopy. Jose M. Paredes, Salvador Casares, Maria J. Ruedas-Rama, Elena Fernandez, Fabio Castello, Lorena Varela, and Angel Orte. Int. J. Mol. Sci. 2012, 13, 9400-9418. Nov-29-2012 Stefan
Effect of pH on fluorescence quenching of organic dyes by graphene oxide. Suppachai Srisantitham, Mongkol Sukwattanasinitt, Sakulsuk Unarunotaia. Colloids and Surfaces A 550 (2018) 123-131. Jun-7-2018 Baris
Efficient Single-Molecule Fluorescence Resonance Energy Transfer Analysis by Site-Specific Dual-Labeling of Protein Using an Unnatural Amino Acid. Moon-Hyeong Seo, Tae-Sun Lee, Eunkyung Kim, Young Lag Cho, Hee-Sung Park, Tae-Young Yoon, and Hak-Sung Kim. Anal. Chem. 2011, 83: 8849-8854. Dec-15-2011 Sofia
Electrically driven directional motion of a four-wheeled molecule on a metal surface. Tibor Kudernac, Nopporn Ruangsupapichat, Manfred Parschau, Beatriz Macia1, Nathalie Katsonis, Syuzanna R. Harutyunyan, Karl-Heinz Ernst & Ben L. Feringa. Nature Vol 479 2011:208-211. Dec-15-2011 Sofia
Energy Transfer in Dye-Coupled Lanthanide-Doped Nanoparticles: From Design to Application. Juan Wang and Renren Deng. Chem. Asian J. 2018, accepted. May-24-2018 Niusha
Entropy-Driven Single Molecule Tug-of-War of DNA at Micro-Nanofluidic Interfaces. Jia-Wei Yeh, Alessandro Taloni, Yeng-Long Chen, and Chia-Fu Chou. Nano Lett. 2012, 12, 1597-1602. Mar-15-2012 Lei
Estimating the Hydrogen Bond Energy. Katharina Wendler, Jens Thar, Stefan Zahn, and Barbara Kirchner. J. Phys. Chem. A 2010, 114, 9529-9536. Mar-21-2013 Per
Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging. Graham T Dempsey, Joshua C Vaughan, Kok Hao Chen, Mark Bates & Xiaowei Zhuang. Nature methods vol.8 no.12 2011 1027-1036+4p. Oct-19-2012 Daniel
Evaluating the Sensitivity of Lipid Headgroup-Bound Chromophores to Their Local Environment. Iwan Setiawan and G. J. Blanchard. J. Phys. Chem. B 2012. Jan-19-2012 Jonas
Evanescent single-molecule biosensing with quantum-limited precision. N. P. Mauranyapin, L. S. Madsen, M. A. Taylor, M. Waleed and W. P. Bowen. Quantum Sensing with Squeezed Light. B. J. Lawrie, P. D. Lett, A. M. Marino, and R. C. Pooser. ACS Photonics 2019, 6, 1307-1318. Aug-15-2019 Katia
Exonucleolytic degradation of high-density labeled DNA studied by fluorescence correlation spectroscopy. Nicky Ehrlich, Katrin Anhalt, Hauke Paulsen, Susanne Brakmann and Christian G. Hübnera. Analyst, 2012, 137, 1160, DOI: 10.1039/c2an15879e. Jan-10-2013 Stefan
Expansion Stimulated Emission Depletion Microscopy (ExSTED). Mengfei Gao, Riccardo Maraspini, Oliver Beutel, Amin Zehtabian, Britta Eickholt, Alf Honigmann, and Helge Ewers. ACS Nano 2018, 12, 4178-4185. DOI: 10.1021/acsnano.8b00776 Apr-11-2019 Chinmaya
Extended-Depth 3D Super-Resolution Imaging Using Probe-Refresh STORM. Danying Lin, Lauren A. Gagnon, Marco D. Howard, Aaron R. Halpern, and Joshua C. Vaughan. Biophysical Journal 114, 1980-1987, April 24, 2018. May-3-2018 Saptaswa
Extending single molecule fluorescence observation time by amplitude-modulated excitation. Lydia Kisley , Wei-Shun Chang , David Cooper, Andrea P Mansur and Christy F Landes. Methods Appl. Fluoresc. 1 (2013): 2-8. Nov-21-2013 Heike
Extracting decay curves of the correlated fluorescence photons measured in fluorescence correlation spectroscopy. Kunihiko Ishii, Tahei Tahara. Chemical Physics Letters 519-520 (2012): 130-133. Jan-12-2012 Vova
Factors Affecting the Quantification of Biomolecular Interactions by Fluorescence Cross-Correlation Spectroscopy. Yong Hwee Foo, Nikolaus Naredi-Rainer, Don C. Lamb, Sohail Ahmed, and Thorsten Wohland. Biophysical Journal Volume 102 March 2012 1174-1183. Mar-15-2012 Lei
Fast multicolor 3d imaging using aberration-corrected multifocus microscopy. Sara Abrahamsson, Jiji Chen, Bassam Hajj, Sjoerd Stallinga, Alexander Y Katsov, Jan Wisniewski, Gaku Mizuguchi, Pierre Soule, Florian Mueller, Claire Dugast Darzacq, Xavier Darzacq, Carl Wu, Cornelia I Bargmann, David A Agard, Maxime Dahan & Mats G L Gustafsson. Nature Methods 2013 vol.10 no.1, 60-65. Feb-14-2013 Jerker
Filtered FCS: Species Auto- and Cross-Correlation Functions Highlight Binding and Dynamics in Biomolecules. Suren Felekyan, Stanislav Kalinin, Hugo Sanabria, Alessandro Valeri, and Claus A. M. Seidel. ChemPhysChem 2012, 13, 1036-1053. May-10-2012
May-31-2012
Jonas
Jerker
Fluorescence correlation spectroscopy analysis for accurate determination of proportion of doubly labeled DNA in fluorescent DNA pool for quantitative biochemical assays. Sen Hou, Lili Sun, Stefan A. Wieczorek, Tomasz Kalwarczyk, Tomasz S. Kaminski, Robert Holyst. Biosensors and Bioelectronics 51 (2014) 8-15. Mar-03-2014 Per
Fluorescence Correlation Spectroscopy at Micromolar Concentrations without Optical Nanoconfinement. Ted A. Laurence, Sonny Ly, Feliza Bourguet, Nicholas O. Fischer, and Matthew A. Coleman. J. Phys. Chem. B 2014, 118, 9662-9667. Dec-11-2014 Johan
Fluorescence Correlation Spectroscopy Directly Monitors Coalescence During Nanoparticle Preparation. David Schaeffel, Roland Hinrich Staff, Hans-Juergen Butt, Katharina Landfester, Daniel Crespy, and Kaloian Koynov. Nano Lett. 2012, 12, 6012-6017. Nov-29-2012 Stefan
Fluorescence correlation methods for imaging cellular behavior of sphingolipid-interacting probes. Rachel Kraut, Nirmalya Bag and Thorsten Wohland. Methods in cell biology, vol 108: 395-427. Feb-22-2012 Thiemo
Fluorescence correlation spectroscopic examination of insulin and insulin-like growth factor 1 binding to live cells. Peter W. Winter, Jeffrey T. McPhee, Alan K. Van Orden, Deborah A. Roess, B. George Barisas. Biophysical Chemistry 159 2011: 303-310. Jan-19-2012 Jonas
Fluorescent correlation spectroscopy measurements with adaptive optics in the intercellular space of spheroids. Charles-Edouard Leroux, Sylvain Monnier, Iréne Wang, Giovanni Cappello, and Antoine Delon. Biomedical optics express Vol. 5, No. 10 October 2014. DOI:10.1364/BOE.5.003730. May-27-2016 Vova
Fluorescence correlation spectroscopy with a total internal reflection fluorescence STED microscope (TIRF-STED-FCS). Marcel Leutenegger, Christian Ringemann, Theo Lasser, Stefan W. Hell and Christian Eggeling. 27 February 2012 / Vol. 20, No. 5 / Optics express 5243-5263. May-10-2012 Jonas
Fluorescence correlation spectroscopy with high-order and dual-color correlation to probe nonequilibrium steady states. Hong Qian and Elliot L. Elson. PNAS March 2, 2004 vol. 101 no. 9: 2828-2833. Nov-08-2012 Lei
Fluorescence Correlation Spectroscopy: Past, Present, Future. Elliot L. Elson. Biophysical Journal Volume 101 December 2011 2855-2870. Dec-01-2011 Evangelos
Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas. G. P. Acuna, F. M. Möller, P. Holzmeister, S. Beater, B. Lalkens, P. Tinnefeld. Science 26 October 2012 vol 338: 506-511. Nov-1-2012 Per
Fluorescence Polarization and Fluctuation Analysis Monitors Subunit Proximity, Stoichiometry, and Protein Complex Hydrodynamics. Tuan A. Nguyen, Pabak Sarkar, Jithesh V. Veetil, Srinagesh V. Koushik, Steven S. Vogel. PLoS ONE. 1 May 2012, Volume 7, Issue 5, e38209. Jun-14-2012 Per
Fluorescence probes to detect lipid-derived radicals. Ken-ichi Yamada, Fumiya Mito, Yuta Matsuoka, Satsuki Ide, Kazushige Shikimachi, Ayano Fujiki, Daiki Kusakabe, Yuma Ishida, Masataka Enoki, Arisa Tada, Miyuki Ariyoshi, Toshihide Yamasaki & Mayumi Yamato. Nature Chemical Biology Vol 12 August 2016, 608-614. Apr-21-2017 Saptaswa
Fluorescence spectral correlation spectroscopy (FSCS) for probes with highly overlapping emission spectra. Ales Benda, Peter Kapusta, Martin Hof, and Katharina Gaus. Optics Express Vol. 22, No. 3 2014, 2973-2988. Apr-25-2014 Stefan
Formation kinetics and quantum yield of photon-induced electron ejection from NADH in aqueous solution. David W. Boldridge. Thomas Hellman Morton and Gary W. Scott. Chemical Physics Letters 1984 Volume 108, number 5, 461-465. Jan-24-2013 Thiemo
FRET in Cell Biology: Still Shining in the Age of Super-Resolution? Hernán E. Grecco and Peter J. Verveer. ChemPhysChem 2011, 12, 484-490. Oct-19-2012 Daniel
FRET-Based Identification of mRNAs Undergoing Translation. Benjamin Stevens, Chunlai Chen, Ian Farrell, Haibo Zhang, Jaskiran Kaur, Steven L. Broitman, Zeev Smilansky, Barry S. Cooperman, Yale E. Goldman. PLoS ONE. Volume 7, Issue 5, e38344. Jun-14-2012 Per
Functional Nanoscale Organization of Signaling Molecules Downstream of the T Cell Antigen Receptor. Eilon Sherman, Valarie Barr, Suliana Manley, George Patterson, Lakshmi Balagopalan, Itoro Akpan, Carole K. Regan, Robert K. Merrill, Connie L. Sommers, Jennifer Lippincott-Schwartz, and Lawrence E. Samelson. Immunity 35, 705-720, November 23, 2011. Dec-15-2011 Sofia
Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution. Gary C H Mo, Brian Ross, Fabian Hertel, Premashis Manna, Xinxing Yang, Eric Greenwald, Chris Booth, Ashlee M Plummer, Brian Tenner, Zan Chen, Yuxiao Wang, Eileen J Kennedy, Philip A Cole, Karen G Fleming, Amy Palmer, Ralph Jimenez, Jie Xiao, Peter Dedecker & Jin Zhang. Published online 13 March 2017; doi:10.1038/nmeth.4221. Mar-31-2017 Elin
Geometry sensing by self-organized protein patterns. Jakob Schweizer, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mönch, and Petra Schwille. PNAS Early Edition 2012: 6 pages. Nov-08-2012 Lei
Giant light-harvesting nanoantenna for single-molecule detection in ambient light. Kateryna Trofymchuk, Andreas Reisch, Pascal Didier, François Fras, Pierre Gilliot, Yves Mely & Andrey S. Klymchenko. Nature Photonics 11, 657-663 (2017) doi:10.1038/s41566-017-0001-7. Jan-25-2018
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Giant Suppression of Photobleaching for Single Molecule Detection via the Purcell Effect. Hu Cang, Yongmin Liu, Yuan Wang, Xiaobo Yin, and Xiang Zhang. Nano Lett 2013, 13 (12), pp 5949-5953. Nov-29-2013 Lei
Gold-Nanorod-Enhanced Fluorescence Correlation Spectroscopy of Fluorophores with High Quantum Yield in Lipid Bilayers. Biswajit Pradhan, Saumyakanti Khatua, Ankur Gupta, Thijs Aartsma, Gerard Canters, and Michel Orrit. J. Phys. Chem. C 2016, 120, 25996-26003. Feb-27-2017 Stefan
Global metabolomics. Allison Doerr. Nature methods. Vol.14 No.1, January 2017, page 32. Jan-13-2017 Per
GPI-anchored proteins do not reside in ordered domains in the live cell plasma membrane Eva Sevcsik, Mario Brameshuber, Martin Fölser, Julian Weghuber, Alf Honigmann & Gerhard J. Schütz. Nature communications 6:6969 2015, DOI: 10.1038/ncomms7969. June-04-2015 Stefan
Heterogeneity and Turnover of Intermediates during Amyloid-beta (Abeta) Peptide Aggregation Studied by Fluorescence Correlation Spectroscopy. Ann Tiiman, Jüri Jarvet, Astrid Gräslund, and Vladana Vukojević. Biochemistry 2015, 54, 7203-7211. Jan-29-2016 Per
Highly Efficient FRET from a Single Nitrogen-Vacancy Center in Nanodiamonds to a Single Organic Molecule. Julia Tisler, Rolf Reuter, Anke Lämmle, Fedor Jelezko, Gopalakrishnan Balasubramanian, Philip R. Hemmer, Friedemann Reinhard, and Jörg Wrachtrup. ACSNano VOL. 5, NO. 10 7893-7898. Mar-29-2012 Evangelos
Highly Sensitive Method for Assay of Drug-Induced Apoptosis Using Fluorescence Correlation Spectroscopy. Lingao Ruan, Zhancheng Xu, Tao Lan, Jinjie Wang, Heng Liu, Chaodong Li, Chaoqing Dong, and Jicun Ren. Anal. Chem. 2012, 84, 7350-7358. Sep-20-2012 Evangelos
How Does the Cell Position Its Proteins? John Travis. Science 2011 Vol. 334: 1048-9. Dec-08-2011 Stefan
Human Platelet Vesicles Exhibit Distinct Size and Proteome. Bhanu P. Jena, Paul M. Stemmer, Sunxi Wang, Guangzhao Mao, Kenneth T. Lewis, and Daniel A. Walz. J. Proteome Res. 2017, 16, 2333-2338. May-16-2018 Miao
Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factormediated upregulation of caveolin-1. Yi Wang, Olga Roche, Chaoying Xu, Eduardo H. Moriyama, Pardeep Heir, Jacky Chung, Frederik C. Roos, Yonghong Chen, Greg Finak, Michael Milosevic, Brian C. Wilsonb, Bin Tean Teh, Morag Park, Meredith S. Irwin, and Michael Ohh. PNAS 2012. Mar-15-2012 Lei
Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison. Eva Wegel, Antonia Göhler, B. Christoffer Lagerholm, Alan Wainman, Stephan Uphoff, Rainer Kaufmann & Ian M. Dobbie. Scientific Reports 6:27290. DOI: 10.1038/srep27290. Jun-17-2016 Joachim
Imaging Proton Transport in Giant Vesicles through Cyclic Peptide-Polymer Conjugate Nanotube Transmembrane Ion Channels. Jason G. Binfield, Johannes C. Brendel, Neil R. Cameron, Ahmed M. Eissa, and Sébastien Perrier. Macromol. Rapid Commun. 2018, 1700831 (6 pages). May-3-2018 Saptaswa
Improving FRET dynamic range with bright green and red fluorescent proteins. Amy J Lam, François St-Pierre, Yiyang Gong, Jesse D Marshall, Paula J Cranfill, Michelle A Baird, Michael R McKeown, Jörg Wiedenmann, Michael W Davidson, Mark J Schnitzer, Roger Y Tsien & Michael Z Lin. Nature methods 2012. Sep-20-2012 Evangelos
Improving Quantum Yield of Upconverting Nanoparticles in Aqueous Media via Emission Sensitization. Michael D. Wisser, Stefan Fischer, Chris Siefe, A. Paul Alivisatos, Alberto Salleo, and Jennifer A. Dionne. Nano Lett. 2018, XXX, XXX-XXX May-24-2018 Niusha
In Vitro Reconstitution of Eukaryotic Ion Channels Using Droplet Interface Bilayers. Sebastian Leptihn, James R. Thompson, J. Clive Ellory, Stephen J. Tucker, and Mark I. Wallace. J. Am. Chem. Soc. 2013, in print. dx.doi.org/10.1021/ja200128n. Jan-31-2013 Stefan
In Vivo Multiphoton NADH Fluorescence Reveals Depth-Dependent Keratinocyte Metabolism in Human Skin. Mihaela Balu, Amaan Mazhar, Carole K. Hayakawa, Richa Mittal, Tatiana B. Krasieva, Karsten Konig, Vasan Venugopalan, and Bruce J. Tromberg. Biophysical Journal Volume 104 January 2013 258-267. Jan-24-2013 Thiemo
Instant super-resolution imaging in live cells and embryos via analog image processing. Andrew G York, Panagiotis Chandris, Damian Dalle Nogare, Jeffrey Head, Peter Wawrzusin, Robert S Fischer, Ajay Chitnis & Hari Shroff. Nature methods, vol.10 no.11, November 2013: 1122-1130. Dec-12-2013 Vova
Integrated Compact Optical Vortex Beam Emitters. Xinlun Cai, Jianwei Wang, Michael J. Strain, Benjamin Johnson-Morris, Jiangbo Zhu, Marc Sorel, Jeremy L. O'Brien, Mark G. Thompson, Siyuan Yu. Science 338, 363-366 (2012). Oct-25-2012 Jerker
Investigation of ground- and excited-state photophysical properties of 5,10,15,20-tetra(4-pyridyl)-21H,23H-porphyrin with ruthenium outlying complexes. R. N. Sampaio, W. R. Gomes, D. M. S. Araujo, A. E. H. Machado, R. A. Silva, A. Marletta, I. E. Borissevitch, A. S. Ito, L. R. Dinelli, A. A. Batista, S. C. Zlio, P. J. Goncalves, and N. M. Barbosa Neto. J. Phys. Chem. A 2012, 116, 18-26. Feb-22-2012 Thiemo
Irradiation- and sensitizer-dependent changes in the lifetime of intracellular singlet oxygen produced in a photosensitized process. Elsa F. F. da Silva, Brian W. Pedersen, Thomas Breitenbach, Rasmus Toftegaard, Marina K. Kuimova, Luis G. Arnaut, and Peter R. Ogilby. J. Phys. Chem. B 2012, 116, 445-461. Feb-22-2012 Thiemo
Kinetic Models for the Role of Protein Thiols during Oxidation in Beer. Mogens L. Andersen, Matheo Gundermann, Bente P. Danielsen, and Marianne N. Lund. J. Agric. Food Chem. 2017, XXX, XXX-XXX. Dec-01-2017 Saptaswa
K-Ras4B Remains Monomeric on Membranes over a Wide Range of Surface Densities and Lipid Compositions. Jean K. Chung, Young Kwang Lee, John-Paul Denson, William K. Gillette, Steven Alvarez, Andrew G. Stephen, and Jay T. Groves. Biophysical Journal 114, 137-145, January 9, 2018 Aug-30-2018 Stefan
Laser pulse trains for controlling excited state dynamics of adenine in water. Jens Petersen, Matthias Wohlgemuth, Bernhard Sellner, Vlasta Bonacic-Koutecky, Hans Lischka and Roland Mitric. Phys. Chem. Chem. Phys. 2012 View Online DOI: 10.1039/c2cp24002e. Feb-22-2012 Thiemo
Label-free and charge-sensitive dynamic imaging of lipid membrane hydration on millisecond time scales. Orly B. Tarun, Christof Hannesschläger, Peter Pohl, and Sylvie Roke. PNAS April 17, 2018, vol. 115, no. 16, 4081-4086. May-03-2018 Saptaswa
Label-free detection and molecular profiling of exosomes with a nano-plasmonic sensor. Hyungsoon Im, Huilin Shao, Yong Il Park, Vanessa M Peterson, Cesar M Castro, Ralph Weissleder & Hakho Lee. Nature biotechnology Volume 32 Number 5 May 2014, 490-498. May-31-2018 Katia
Label-free imaging of amyloid plaques in Alzheimer's disease with stimulated Raman scattering microscopy. Minbiao Ji, Michal Arbel, Lili Zhang, Christian W. Freudiger, Steven S.Hou, Dongdong Lin, Xinju Yang, Brian J. Bacskai, X. Sunney Xie. Sci. Adv. 2018; 4 : eaat7715. Nov-29-2018 Saptaswa
Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy. Luay M. Almassalha, Greta M. Bauer, John E. Chandlera, Scott Gladsteina, Lusik Cherkezyan, Yolanda Stypula-Cyrus, Samuel Weinberg, Di Zhang, Peder Thusgaard Ruhoff, Hemant K. Roy, Hariharan Subramanian, Navdeep S. Chandel, Igal Szleifer, and Vadim Backmana. PNAS, Published online October 4, 2016. Apr-21-2017 Saptaswa
Label-free quantification of the effects of lithium niobate polarization on cell adhesion via holographic microscopy. Biagio Mandracchia, Oriella Gennari, Alessia Bramanti, Simonetta Grilli, Pietro Ferraro. J. Biophotonics. 2018;11:e201700332. https://doi.org/10.1002/jbio.201700332 Apr-18-2019 Alessandro
Layer with reduced viscosity at water-oil interfaces probed by fluorescence correlation spectroscopy. Dapeng Wang, Leonid Pevzner, Chen Li, Kalina Peneva, Christopher Y. Li, Derek Y. C. Chan, Klaus Müllen, Markus Mezger, Kaloian Koynov, and Hans-Jürgen Butt. Physical Review E 87, 012403 (2013), 12403-1-7. May-23-2013 Stefan
Moving to a World Beyond "p<0.05". Ronald L. Wasserstein, Allen L. Schirm & Nicole A. Lazar. the American Statistician 2019, Vol. 73, No. S1, 1-19: Editorial https://doi.org/10.1080/00031305.2019.1583913 Apr-04-2019 Joachim
Ligands for Fluorescence Correlation Spectroscopy on Protein-Coupled Receptors. D. Jakobs, T Sorkalla and H Häberlein. Current Medicinal Chemistry 2012, 19 4722-4730. Nov-29-2012 Stefan
Linking Single-Molecule Blinking to Chromophore Structure and Redox Potentials. Ingo H. Stein, Stella Capone, Jochem H. Smit, Fabian Baumann, Thorben Cordes, and Philip Tinnefeld. ChemPhysChem 2012, 13, 931-937. May-10-2012 Jonas
Links between metabolism and cancer. Chi V. Dang. Genes Dev. 2012 26: 877-890. Jun-07-2012 Thiemo
Live-cell 3D super-resolution imaging in thick biological samples. Francesca Cella Zanacchi, Zeno Lavagnino1, Michela Perrone Donnorso, Alessio Del Bue, Laura Furia, Mario Faretta & Alberto Diaspro. Nature Methods Vol.8 no.12: 1047-1050. Jan-19-2012 Jonas
Live-Cell Superresolution Imaging by Pulsed STED Two-Photon Excitation Microscopy. Kevin T. Takasaki, Jun B. Ding, and Bernardo L. Sabatini. Biophysical Journal Volume 104 February 2013 770-777. Mar-21-2013 Per
Low toxic fluorescent nanoprobe applicable for sensing pH changes in biological environment. Lihua Lu, Chenfu Liu, Guodong Li, Li-Juan Liu, Chung-Hang Leung, Dik-Lung Ma. Sensors and Actuators B 257 (2018) 860-865. Jun-7-2018 Baris
Long-Term Observation of Fluorescence of Free Single Molecules To Explore Protein-Folding Energy Landscapes. Kiyoto Kamagata, Toshifumi Kawaguchi, Yoshitomo Iwahashi, Akinori Baba, Kazuya Fujimoto, Tamiki Komatsuzaki, Yoshihiro Sambongi, Yuji Goto, and Satoshi Takahashi. J. Am. Chem. Soc. 2012, 134, 11525-11532. Jan-31-2013 Evangelos
Mapping Cell Membrane Fluctuations Reveals Their Active Regulation and Transient Heterogeneities. Arikta Biswas, Amal Alex, and Bidisha Sinha. Biophysical Journal 113 Oct 2017, 1768-1781. Oct-27-2017 Per
Mapping Intracellular Temperature Using Green Fluorescent Protein. Jon S. Donner, Sebastian A. Thompson, Mark P. Kreuzer, Guillaume Baffou, and Romain Quidant. Nano Lett. 2012, XXX, XXX-XXX. Mar-15-2012 Lei
Mapping of hemoglobin in erythrocytes and erythrocyte ghosts using two photon excitation fluorescence microscopy. Katarina Bukara, Svetlana Jovanić, Ivana T. Drvenica, Ana Stancić, Vesna Ilić, Mihailo D. Rabasović, Dejan Pantelić, Branislav Jelenković, Branko Bugarski, Aleksandar J. Krmpot., Biomed. Opt. 22(2), 026003 (2017), doi: 10.1117/1.JBO.22.2.026003. Mar-20-2017 Per
Mass Action at the Single-Molecule Level. Min Ju Shon and Adam E. Cohen. J. Am. Chem. Soc. 2012, 134, 14618-14623. dx.doi.org/10.1021/ja3062425. Jan-31-2013 Stefan
Maturation-Dependent HIV-1 Surface Protein Redistribution Revealed by Fluorescence Nanoscopy. Jakub Chojnacki, Thorsten Staudt, Bärbel Glass, Pit Bingen, Johann Engelhardt, Maria Anders, Jale Schneider, Barbara Müller, Stefan W. Hell, Hans-Georg Kräusslich. Science 26 October 2012 vol 338: 524-527. Nov-1-2012 Per
Measurement of Rapid Protein Diffusion in the Cytoplasm by Photo-Converted Intensity Profile Expansion. Rotem Gura Sadovsky, Shlomi Brielle, Daniel Kaganovich, Jeremy L. England. Cell Reports 18, 2795-2806. http://dx.doi.org/10.1016/j.celrep.2017.02.063 May-05-2017 Stefan
Measuring fast stochastic displacements of bio-membranes with dynamic optical displacement spectroscopy. C. Monzel, D. Schmidt, C. Kleusch, D. Kirchenbüchler, U. Seifert, A-S Smith, K. Sengupta & R. Merkel. Nature Communications 6, 06 October 2015, Article number: 8162 doi:10.1038/ncomms9162. May-27-2016 Vova
Measuring Mobility in Chromatin by Intensity-Sorted FCS. Melody Di Bona, Michael A. Mancini, Davide Mazza, Giuseppe Vicidomini, Alberto Diaspro, and Luca Lanzano . Biophysical Journal 116, 1-13, March 19, 2019. Apr-04-2019 Joachim
Measuring Protein Binding to Lipid Vesicles by Fluorescence Cross-Correlation Spectroscopy. Daniela Kruger, Jan Ebenhan, Stefan Werner, and Kirsten Bacia1. Biophysical Journal 113, 1311-1320, September 19, 2017. Nov-17-2017 Jerker
Microfluidity mapping using fluorescence correlation spectroscopy: A new way to investigate plasma membrane microorganization of living cells. Pascale Winckler, Aurélie Cailler, Régis Deturche, Pierre Jeannesson, Hamid Morjani, Rodolphe Jaffiol. Biochimica et Biophysica Acta 1818 (2012) 2477-2485. Oct-11-2012 Vova
Millitesla magnetic field effects on the photocycle of an animal cryptochrome. Dean M. W. Sheppard, Jing Li, Kevin B. Henbest, Simon R. T. Neil, Kiminori Maeda, Jonathan Storey, Erik Schleicher, Till Biskup, Ryan Rodriguez, Stefan Weber, P. J. Hore, Christiane R. Timmel & Stuart R. Mackenzie. Scientific Reports 7:42228, p. 1-7, DOI: 10.1038/srep42228. Feb-17-2017 Johan
Model-free uncertainty estimation in stochastical optical fluctuation imaging (SOFI) leads to a doubled temporal resolution. Wim Vandenberg, Sam Duwé, Marcel Leutenegger, Benjamien Moeyaert, Bartosz Krajnik, Theo Lasser and Peter Dedecker. Biomedical optics express Vol. 7, No. 2, DOI:10.1364/BOE.7.000467. Jan-29-2016 Per
Molecular recognition of a single sphingolipid species by a protein's transmembrane domain. F. Xabier Contreras, Andreas M. Ernst, Per Haberkant, Patrik Björkholm, Erik Lindahl, Basak Gönen, Christian Tischer, Arne Elofsson, Gunnar von Heijne, Christoph Thiele, Rainer Pepperkok, Felix Wieland & Britta Brügger. Nature 26 January 2012 Vol 481:525. Feb-09-2012 Jerker
Monitoring drug nanocarriers in human blood by near-infrared fluorescence correlation spectroscopy. Inka Negwer, Andreas Best, Meike Schinnerer, Olga Schäfer, Leon Capeloa, Manfred Wagner, Manfred Schmidt, Volker Mailänder, Mark Helm, Matthias Barz, Hans-Jürgen Butt, & Kaloian Koynov. Nature communications (2018)9:5306 https://doi.org/10.1038/s41467-018-07755-0 Jan-17-2019 Brant
Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET. Antonino Ingargiola, Shimon Weiss, and Eitan Lerner. J. Phys. Chem. B 2018. Dec-06-2018 Per
Moving to a World Beyond "p<0.05". Ronald L. Wasserstein, Allen L. Schirm & Nicole A. Lazar. the American Statistician 2019, Vol. 73, No. S1, 1­19: Editorial https://doi.org/10.1080/00031305.2019.1583913 Apr-04-2019 Joachim
mScarlet: A bright monomeric red fluorescent protein for cellular imaging. Daphne S Bindels, Lindsay Haarbosch, Laura van Weeren, Marten Postma, Katrin E Wiese, Marieke Mastop, Sylvain Aumonier, Guillaume Gotthard, Antoine Royant, Mark A Hink & Theodorus W J Gadella Jr. Nature methods. Vol.14 No.1, January 2017, page 53-64. doi:10.1038 Jan-13-2017 Per
Multicolor Fluorescence Nanoscopy in Fixed and Living Cells by Exciting Conventional Fluorophores with a Single Wavelength. Ilaria Testa, Christian A. Wurm, Rebecca Medda, Ellen Rothermel, Claas von Middendorf, Jonas Fölling, Stefan Jakobs, Andreas Schönle, Stefan W. Hell, and Christian Eggeling. Biophysical Journal Volume 99 October 2010 2686-2694. Oct-19-2012 Daniel
Multicolour nanoscopy of fixed and living cells with a single STED beam and hyperspectral detection. Franziska R. Winter, Maria Loidolt, Volker Westphal, Alexey N. Butkevich, Carola Gregor, Steffen J. Sahl & Stefan W. Hell. Scientific Reports 7:46492 2017, DOI: 10.1038/srep46492. May-19-2017 Jan
Multicolor Single Molecule Tracking of Stochastically Active Synthetic Dyes. Alexander Benke, Nicolas Olivier, Julia Gunzenhäuser, and Suliana Manley. Nano Lett. 2012, 12, 2619-2624. Jun-21-2012 Lei
Multimodal optical imaging for detecting breast cancer. Rakesh Patel, Ashraf Khan, Dennis Wirth, Michal Kamionek, Dina Kandil, Robert Quinlan, and Anna N. Yaroslavsky. Journal of Biomedical Optics 17(6), 066008 (10 pages June 2012) Jun-21-2012 Lei
Multiplexed imaging of high density libraries of RNAs with MERFISH and expansion microscopy. Guiping Wang, Jeffrey R. Moffitt, Xiaowei Zhuang. bioRxiv preprint first posted online Dec. 22, 2017; doi: http://dx.doi.org/10.1101/238899. January-25-2018 Stefan
Multiplexed multiple-tau auto- and cross-correlators on a single field programmable gate array. G. Mocsár, B. Kreith, J. Buchholz, J. W. Krieger, J. Langowski, and G. Vámosi, Review of scientific instruments 83 2012, 046101-3. May-31-2012 Jerker
Multispectral optical tweezers for biochemical fingerprinting of CD9-positive exosome subpopulations. Randy P. Carney, Sidhartha Hazari, Macalistair Colquhoun, Di Tran, Billanna Hwang, Michael S. Mulligan, James D. Bryers, Eugenia Girda, Gary S. Leiserowitz, Zachary J. Smith, and Kit S. Lam. Anal Chem. 2017 May 16;89(10):5357-5363. May-31-2018 Katia
Multiplexing PKA and ERK1&2 kinases FRET biosensors in living cells using single excitation wavelength dual colour FLIM. Claire Demeautis, Franois Sipieter, Julien Roul, Catherine Chapuis, Sergi Padilla-Parra, Franck B. Riquet & Marc Tramier. Scientific Reports 7:41026, 14 pages, DOI: 10.1038/srep41026. Feb-17-2017 Johan
Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes Francisco Balzarotti, Yvan Eilers, Klaus C. Gwosch, Arvid H. Gynnå, Volker Westphal, Fernando D. Stefani, Johan Elf, Stefan W. Hell. Science 355 , 606-612 (2017). Mar-10-2017 Joachim
Nanoscale dynamics of phospholipids reveals an optimal assembly mechanism of pore-forming proteins in bilayer membranes. Nirod Kumar Sarangi, K. G. Ayappa, Sandhya. S. Visweswariah and Jaydeep Kumar Basu. Phys. Chem. Chem. Phys., 2016, 18, 29935-29945. Nov-11-2016 Joachim
Nanoscale live-cell imaging using hopping probe ion conductance microscopy. Pavel Novak, Chao Li, Andrew I Shevchuk, Ruben Stepanyan, Matthew Caldwell, Simon Hughes, Trevor G Smart, Julia Gorelik, Victor P Ostanin, Max J Lab, Guy W J Moss, Gregory I Frolenkov, David Klenerman & Yuri E Korchev. Nature Methods Vol.6 No.4 April 2009 279-282. Apr-25-2014 Stefan
Nanoscale Fluorescence Correlation Spectroscopy on Intact Living Cell Membranes with NSOM Probes. Carlo Manzo, Thomas S. van Zanten, and Maria F. Garcia-Parajo. Biophysical Journal Volume 100 January 2011 L08-L10. Jun-21-2012 Lei
Nanoscale Spatiotemporal Diffusion Modes Measured by Simultaneous Confocal and Stimulated Emission Depletion Nanoscopy Imaging. Falk Schneider, Dominic Waithe, Silvia Galiani, Jorge Bernardino de la Serna, Erdinc Sezgin, and Christian Eggeling. Nano Lett. 2018, 18, 4233-4240. Aug-30-2018 Stefan
Nanoscopic Approach to Quantification of Equilibrium and Rate Constants of Complex Formation at Single-Molecule Level. Xuzhu Zhang, Evangelos Sisamakis, Krzysztof Sozanski, and Robert Holyst. J. Phys. Chem. Lett. 2017, 8, 5785-5791. Nov-24-2017 Elin
Nanoscopy in a Living Mouse Brain. Sebastian Berning, Katrin I. Willig, Heinz Steffens, Payam Dibaj, Stefan W. Hell. Science vol 335 3 February 2012:551. Feb-09-2012
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Nanoscopy of Living Brain Slices with Low Light Levels. Ilaria Testa, Nicolai T. Urban, Stefan Jakobs, Christian Eggeling, Katrin I. Willig, and Stefan W. Hell. Neuron 75 2012, 992-1000. Oct-19-2012 Daniel
Near-infrared STED nanoscopy with an engineered bacterial phytochrome. Maria Kamper, Haisen Ta, Nickels A. Jensen, Stefan W. Hell & Stefan Jakobs. Nature communications (2018)9:4762 DOI: 10.1038/s41467-018-07246-2. Jan-17-2019 Brant
New aspects of the Warburg effect in cancer cell biology. Steven J. Bensinger, Heather R. Christofk. Seminars in Cell & Developmental Biology xxx (2012) xxxxxx. Jun-07-2012 Thiemo
New Technologies for Analysis of Extracellular Vesicles. Huilin Shao, Hyungsoon Im, Cesar M. Castro, Xandra Breakefield, Ralph Weissleder, and Hakho Lee. Chem.Rev. 2018, 118, 1917-1950. May-31-2018 Katia
Noise-Induced Modulation of the Relaxation Kinetics around a Non-Equilibrium Steady State of Non-Linear Chemical Reaction Networks. Rajesh Ramaswamy, Ivo F. Sbalzarini, Nelido Gonzalez-Segredo. PLoS ONE. Volume 6, Issue 1, e16045. Jun-14-2012 Per
Nonbleaching Fluorescence of Gold Nanoparticles and Its Applications in Cancer Cell Imaging. Hua He, Chao Xie, and Jicun Ren. Anal. Chem. 2008, 80, 5951-5957. Oct-11-2012 Vova
Nonlinear Correlation Spectroscopy (NLCS). Matthias Geissbuehler, Luigi Bonacina, Vladislav Shcheslavskiy, Noelia L. Bocchio, Stefan Geissbuehler, Marcel Leutenegger, Iwan Märki, Jean-Pierre Wolf, and Theo Lasser. Nano Lett. 2012, 12, 1668-1672. Apr-19-2012 Stefan
Note: A 4 ns hardware photon correlator based on a general-purpose field-programmable gate array development board implemented in a compact setup for fluorescence correlation spectroscopy. Stanislav Kalinin, Ralf Kühnemuth, Hayk Vardanyan, and Claus A. M. Seidel. Rev Sci Instrum 83 2012, 096105 doi: 10.1063/1.4753994. Oct-11-2012 Vova
Novel Liposome-Based Surface-Enhanced Raman Spectroscopy (SERS) Substrate. William Lum, Ian Bruzas, Zohre Gorunmez, Sarah Unser, Thomas Beck, and Laura Sagle. J.Phys.Chem.Lett. 2017, 8, 2639-2646. May-31-2018 Katia
Nuclear export dynamics of RNA-protein complexes. David Grünwald, Robert H. Singer & Michael Rout. Nature Vol 475 2011: 333-341. Dec-08-2011 Stefan
Number and Brightness Analysis of LRRK2 Oligomerization in Live Cells. Nicholas G. James, Michelle A. Digman, Enrico Gratton, Barbara Barylko, Xiaodong Ding, Joseph P. Albanesi, Matthew S. Goldberg, and David M. Jameson. Biophysical Journal Volume 102 June 2012 L41-L43. Jun-07-2012 Thiemo
One-Photon Plasmon Luminescence and Its Application to Correlation Spectroscopy as a Probe for Rotational and Translational Dynamics of Gold Nanorods. Alexei Tcherniak, Sergio Dominguez-Medina, Wei-Shun Chang, Pattanawit Swanglap, Liane S. Slaughter, Christy F. Landes, and Stephan Link. J. Phys. Chem. C 2011, 115, 15938-15949. May-23-2013 Stefan
Opening and Closing of the Bacterial RNA Polymerase Clamp. Anirban Chakraborty et al. Science 337, 591 (2012); DOI: 10.1126/science.1218716 Sep-20-2012 Evangelos
Optical coherence correlation spectroscopy (OCCS). Stephane Broillet, Akihiro Sato, Stefan Geissbuehler, Christophe Pache, Arno Bouwens, Theo Lasser, and Marcel Leutenegger. Optics Express Vol. 22, No. 1 2014, 782-802. Apr-25-2014 Stefan
Optical Control of Protein Activity by Fluorescent Protein Domains. Xin X. Zhou, Hokyung K. Chung, Amy J. Lam, Michael Z. Lin. Science 2012 vol 338, 810-815. Feb-14-2013 Jerker
Optical Modulation and Selective Recovery of Cy5 Fluorescence. Chaoyang Fan, Jung-Cheng Hsiang, and Robert M. Dickson. ChemPhysChem 2012, 13, 1023-1029. Apr-26-2012 Vova
Optically monitoring voltage in neurons by photo-induced electron transfer through molecular wires. Evan W. Miller, John Y. Lin, E. Paxon Frady, Paul A. Steinbach, William B. Kristan, Jr, and Roger Y. Tsien. PNAS February 7, 2012 vol. 109 no. 6: 2114-2119. Feb-09-2012 Jerker
Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions. Sean Quirin, Sri Rama Prasanna Pavani, and Rafael Piestun. PNAS January 17, 2012 vol. 109 no. 3 675-679. Feb-22-2012 Thiemo
Optimized labeling of membrane proteins for applications to super-resolution imaging in confined cellular environments using monomeric streptavidin. Ingrid Chamma, Olivier Rossier, Grégory Giannone, Olivier Thoumine & Matthieu Sainlos. Nature Protocols vol.12 NO.4 2017: 748-763. May-19-2017 Jan
Outlook Breast Cancer. Michelle Grayson. Nature vol 485, 31 May 2012, S49. Jun-14-2012 Per
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Outlook Breast Cancer: Powering up. Julie Corliss. Nature vol 485, 31 May 2012, S62-63. Jun-14-2012 Per
Outlook Breast Cancer: The Hard Facts. Amy Maxmen. Nature vol 485, 31 May 2012, S50-51. Jun-14-2012 Per
Outlook Breast Cancer: The positive in the negative. Kendall Powell. Nature vol 485, 31 May 2012, S52-53. Jun-14-2012 Per
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Outlook Breast Cancer: The rude awakening. Jocelyn Rice. Nature vol 485, 31 May 2012, S55-57. Jun-14-2012 Per
PAM: A Framework for Integrated Analysis of Imaging, Single-Molecule, and Ensemble Fluorescence Data. Waldemard Schrimpf, Anders Barth, Jelle Hendrix, and Don C. Lamb. Biophysical Journal 114, 1518-1528, April 10, 2018. Apr-19-2018 Joachim
pH Dependence of the Fluorescence Lifetime of FAD in Solution and in Cells. Md. Serajul Islam, Masato Honma, Takakazu Nakabayashi, Masataka Kinjo and Nobuhiro Ohta. Int. J. Mol. Sci. 2013, 14, 1952-1963; doi:10.3390. Jan-24-2013 Thiemo
Photobleaching and Blinking of TAMRA Induced by Mn2+. Elana M. S. Stennett, Gerdenis Kodis, and Marcia Levitus. ChemPhysChem 2012, 13, 909-913. May-31-2012 Jerker
Photothermal signal distribution analysis (PhoSDA). Markus Selmke, Marco Braun, Romy Schachoff and Frank Cichos. Phys. Chem. Chem. Phys., 2013, 15, 4250-4257. May-23-2013 Stefan
Plasma Membrane is Compartmentalized by a Self-Similar Cortical Actin Meshwork. Sanaz Sadegh, Jenny L. Higgins, Patrick C. Mannion, Michael M. Tamkun, and Diego Krapf. Phys. Rev. X 7, 011031-1:10 (2017). May-19-2017 Jan
Polymer Dynamics, Fluorescence Correlation Spectroscopy, and the Limits of Optical Resolution. Jörg Enderlein. Physical Review Letters 108 2012:108101. May-10-2012
Oct-4-2012
Jonas
Stefan
Probing cellular protein complexes using single-molecule pull-down. Ankur Jain, Ruijie Liu, Biswarathan Ramani, Edwin Arauz, Yuji Ishitsuka, Kaushik Ragunathan, Jeehae Park, Jie Chen, Yang K. Xiang & Taekjip Ha. Nature Vol 473 2011: 483-489. Dec-08-2011 Stefan
Probing the electromagnetic field of a 15-nanometre hotspot by single molecule imaging. Hu Cang, Anna Labno, Changgui Lu, Xiaobo Yin, Ming Liu, Christopher Gladden, Yongmin Liu & Xiang Zhang. Nature Vol. 469 2011: 385-9. Dec-01-2011 Evangelos
Probing the Radiative Transition of Single Molecules with a Tunable Microresonator. Alexey I. Chizhik, Anna M. Chizhik, Dmitry Khoptyar, Sebastian Bär, Alfred J. Meixner, and Jörg Enderlein. Nano Lett. 2011, 11, 1700-1703. Oct-4-2012 Stefan
Protein Oligomerization Monitored by Fluorescence Fluctuation Spectroscopy: Self-Assembly of Rubisco Activase. Manas Chakraborty, Agnieszka M. Kuriata, J. Nathan Henderson, Michael E. Salvucci, Rebekka M. Wachter, and Marcia Levitus. Biophysical Journal Volume 103 September 2012 949-958. Oct-25-2012 Jerker
Protein-binding dynamics imaged in a living cell. Yael Phillip, Vladimir Kiss, and Gideon Schreiber. PNAS 2012 in press. Mar-29-2012 Evangelos
Pulling on single molecules. Natalie de Souza. Nature methods vol.9 no.9 September 2012: 873-877. Oct-25-2012 Jerker
Puromycin Analogues Capable of Multiplexed Imaging and Profiling of Protein Synthesis and Dynamics in Live Cells and Neurons. Jingyan Ge, Cheng-Wu Zhang, Xue Wen Ng, Bo Peng, Sijun Pan, Shubo Du, Danyang Wang, Lin Li, Kah-Leong Lim, Thorsten Wohland, and Shao Q. Yao. Angew. Chem. Int. Ed. 2016, 55, 4933-4937. Apr-07-2018 Brant
Quantification of Fluorophore Copy Number from Intrinsic Fluctuations during Fluorescence Photobleaching. Chitra R. Nayak and Andrew D. Rutenberg. Biophysical Journal Volume 101 2011: 2284-2293. Dec-01-2011 Evangelos
Quantifying Lipid Diffusion by Fluorescence Correlation Spectroscopy: A Critical Treatise. Fabian Heinemann, Viktoria Betaneli, Franziska A. Thomas, and Petra Schwille. Langmuir 2012, 28, 13395-13404. Nov-29-2012 Stefan
Quantifying reversible surface binding via surface-integrated FCS. Jonas Mücksch, Philipp Blumhardt, Maximilian T. Strauss, Eugene P Petrov, Ralf Jungmann, and Petra Schwille. Nano Lett., Just Accepted Manuscript, DOI: 10.1021/acs.nanolett.8b00875. Apr-19-2018 Joachim
Quantifying spatial and temporal variations of the cell membrane ultrastructure by bimFCS. Weixiang Jin, M. Fethullah Simsek, Arnd Pralle. Methods (2018), https://doi.org/10.1016/j.ymeth.2018.02.019. Apr-19-2018 Joachim
Quantitative fluorescence labeling of aldehyde-tagged proteins for single-molecule imaging. Xinghua Shi, Yonil Jung, Li-Jung Lin, Cheng Liu, Cong Wu, Isaac K O Cann & Taekjip Ha. Nature methods 2012 vol.9 no.5 499-506. May-31-2012 Jerker
Quantitative imaging of membrane lipid order in cells and organisms. Dylan M Owen1, Carles Rentero, Astrid Magenau, Ahmed Abu-Siniyeh & Katharina Gaus. Nature protocols 2012 Vol.7 no 1: 24. Jan-19-2012 Jonas
Quantum Correlation Between Distant Diamonds. L.-M. Duan, Science Vol. 334: 1213-4 (2011). Dec-08-2011 Stefan
Quantum Sensing with Squeezed Light. B. J. Lawrie, P. D. Lett, A. M. Marino, and R. C. Pooser. ACS Photonics 2019, 6, 1307-1318. Aug-15-2019 Katia
Radiationless deactivation of hybridization-sensitive DNA probe. Hyo-Sup Shin, Akimitsu Okamoto, Yasushi Sako, Sok Won Kim, Soo Yong Kim, Chan-Gi Pack. Journal of Luminescence 132 (2012) 2566-2571. Feb-14-2013 Jerker
Rapid Analysis of Cell-Nanoparticle Interactions using Single-Cell Raman Trapping Microscopy. Maria Steinke, Florian Zunhammer, Elisavet I. Chatzopoulou, Henrik Teller, Karin Schütze, Heike Walles, Joachim O. Rädler, and Cordula Grüttner. Angew. Chem. Int. Ed. 2018, 57, 4946-4950. May-3-2018 Saptaswa
Rapid Perturbation of Free-Energy Landscapes: From In Vitro to In Vivo. Hannah Gelman, Max Platkov, and Martin Gruebele. DOI: 10.1002/chem.201104047, Chem. Eur. J. 2012, 18, 6420-6427. Jan-31-2013 Evangelos
RapidSTORM: accurate, fast open-source software for localization microscopy. Steve Wolter, Anna Lschberger, Thorge Holm, Sarah Aufmkolk, Marie-Christine Dabauvalle, Sebastian van de Linde & Markus Sauer. Nature Methods vol.9 no.11 November 2012: 1040-1. Nov-08-2012 Lei
Reaction Mechanism of Photoinduced Decarboxylation of the Photoactivatable Green Fluorescent Protein: An ONIOM(QM:MM) Study. Lina Ding, Lung Wa Chung, and Keiji Morokuma. J. Phys. Chem. B 2013, in print. dx.doi.org/10.1021. Jan-24-2013 Thiemo
Recent research on stimulated emission depletion microscopy for reducing photobleaching. C. Li, S. Liu, W. Wang, W. Liu, C. Kuang, & X. Liu. Journal of Microscopy, Vol. 00, Issue 0 2018, pp. 1-13. Apr-19-2018 Joachim
Redox-based reagents for chemoselective methionine bioconjugation. Shixian Lin, Xiaoyu Yang, Shang Jia, Amy M. Weeks, Michael Hornsby, Peter S. Lee, Rita V. Nichiporuk, Anthony T. Iavarone, James A. Wells, F. Dean Toste, Christopher J. Chang. Science 355 , 597-602 (2017). Mar-10-2017 Joachim
Reprogramming of proline and glutamine metabolism contributes to the proliferative and metabolic responses regulated by oncogenic transcription factor c-MYC. Wei Liu,, Anne Le, Chad Hancock, Andrew N. Lane, Chi V. Dange, Teresa W.-M. Fan, and James M. Phanga. PNAS June 5, 2012 vol. 109 no. 23 8983-8988. Jun-07-2012 Thiemo
Reorganization of Lipid Diffusion by Myelin Basic Protein as Revealed by STED Nanoscopy. Olena Steshenko, Débora M. Andrade, Alf Honigmann, Veronika Mueller, Falk Schneider, Erdinc Sezgin, Stefan W. Hell, Mikael Simons, and Christian Eggeling. Biophysical Journal 110, 2441-2450, June 7, 2016. Jun-17-2016 Joachim
Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy. Andrew G York, Sapun H Parekh, Damian Dalle Nogare, Robert S Fischer, Kelsey Temprine, Marina Mione, Ajay B Chitnis, Christian A Combs & Hari Shroff. Nature Methods (2012) doi:10.1038/nmeth.2025. Oct-11-2012 Vova
Respective contributions of single and compound granule fusion to secretion by activated platelets. Anita Eckly, Jean-Yves Rinckel, Fabienne Proamer, Neslihan Ulas, Smita Joshi, Sidney W. Whiteheart, and Christian Gachet. Blood, 24 November 2016 x Volume 128, number 21, 2538-2549. May-16-2018 Miao
Revealing protein oligomerization and densities in situ using spatial intensity distribution analysis. Antoine G. Godin, Santiago Costantino, Louis-Etienne Lorenzo, Jody L. Swift, Mikhail Sergeev, Alfredo Ribeiro-da-Silva, Yves De Koninck, and Paul W. Wiseman. PNAS 2011, vol. 108, no. 17:7010-7015. Oct-4-2012 Stefan
Rotational and Translational Diffusion of Peptide-Coated CdSe/CdS/ZnS Nanorods Studied by Fluorescence Correlation Spectroscopy. James M. Tsay, Sören Doose, and Shimon Weiss. J. Am. Chem. Soc. 2006, 128, 1639-1647. May-23-2013 Stefan
Retire statistical significance. Valentin Amrhein, Sander Greenland, Blake McShane and more than 800 signatories. Nature 21 March 2019 Vol 567, pages:283, 305-307. Apr-04-2019 Joachim
Self-organizing actin patterns shape membrane architecture but not cell mechanics. M. Fritzsche, D. Li, H. Colin-York, V.T. Chang, E. Moeendarbary, J.H. Felce, E. Sezgin, G. Charras, E. Betzig & C. Eggeling. Nature Communications 8 2017:14347, DOI: 10.1038/ncomms14347. Mar-10-2017 Joachim
Self-Segregation of Myelin Membrane Lipids in Model Membranes. Larisa Yurlova, Nicoletta Kahya, Shweta Aggarwal, Hermann-Josef Kaiser, Salvatore Chiantia, Mostafa Bakhti, Yael Pewzner-Jung,k Oshrit Ben-David,k Anthony H. Futerman,k Britta Brügger and Mikael Simons. Biophysical Journal Volume 101 December 2011: 2713-2720. Jan-12-2012 Vova
Sharper low-power STED nanoscopy by time gating. Giuseppe Vicidomini, Gael Moneron1, Kyu Y Han, Volker Westphal, Haisen Ta, Matthias Reuss, Johann Engelhardt, Christian Eggeling & Stefan W Hell. Nature methods Vol.8 No.7 July 2011: 571-574. Jan-26-2012 Daniel
Simultaneous, accurate measurement of the 3D position and orientation of single molecules. Mikael P. Backlunda, Matthew D. Lewa, Adam S. Backer, Steffen J. Sahl, Ginni Grover, Anurag Agrawal, Rafael Piestund, and W. E. Moerner. PNAS November 20 2012 vol. 109 no. 47, 19087-19092. Feb-14-2013 Jerker
Simultaneous Measurement of Ionic Current and Fluorescence from Single Protein Pores. Andrew J. Heron, James R. Thompson, Bríd Cronin, Hagan Bayley, and Mark I. Wallace. J. AM. CHEM. SOC. 2013, in print. 10.1021/ja808128s. Jan-31-2013 Stefan
Single Cell Analysis of Ligand Binding and Complex Formation of Interleukin-4 Receptor Subunits. Thomas Weidemann, Remigiusz Worch, Kristina Kurgonaite, Martin Hintersteiner, Christian Bokel, and Petra Schwille. Biophysical Journal Volume 101 November 2011:2360-2369. Dec-15-2011 Sofia
Single molecule fluorescence correlation spectroscopy of single apoptotic cells using a red-fluorescent caspase probe. Meicong Dong, Michelle M. Martinez, Michael F. Mayer and Dimitri Pappas. Analyst 2012 View Online, DOI: 10.1039/c2an16173g. Feb-22-2012 Thiemo
Single-Image Diffusion Coefficient Measurements of Proteins in Free Solution. Shannon Kian Zareh, Michael C. DeSantis, Jonathan M. Kessler, Je-Luen Li, and Y. M. Wang. Biophysical Journal Volume 102 April 2012 1685-1691. May-10-2012 Jonas
Single-Molecule Analysis of the Supramolecular Organization of the M2 Muscarinic Receptor and the Gi1 Protein. Rabindra V. Shivnaraine, Dennis D. Fernandes, Huiqiao Ji, Yuchong Li, Brendan Kelly, Zhenfu Zhang, Yi Rang Han, Fei Huang, Krishana S. Sankar, David N. Dubins, Jonathan V. Rocheleau, James W. Wells, and Claudiu C. Gradinaru. J. Am. Chem. Soc. 2016, 138, 11583-11598. Apr-07-2018 Brant
Single-molecule assays for investigating protein misfolding and aggregation. Armin Hoffmann, Krishna Neupane and Michael T. Woodside. Phys. Chem. Chem. Phys., 2013, 15, 7934-7948. Mar-03-2014 Per
Single-Molecule Fluorescence Imaging in Living Cells. Tie Xia, Nan Li, and Xiaohong Fang. Annu. Rev. Phys. Chem. 2013. 64:459-80. Jan-24-2013 Thiemo
Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins. Madeleine B. Borgia, Alessandro Borgia, Robert B. Best, Annette Steward, Daniel Nettels, Bengt Wunderlich, Benjamin Schuler & Jane Clarke. Nature Vol 474 2011: 662-666. Dec-08-2011 Stefan
Single-wavelength two-photon excitation stimulated emission depletion (SW2PE-STED) superresolution imaging. Paolo Bianchini, Benjamin Harke, Silvia Galiani, Giuseppe Vicidomini, and Alberto Diaspro. PNAS Early Edition 1-4. May-24-2012 Daniel
Solid Immersion Facilitates Fluorescence Microscopy with Nanometer Resolution and Sub-Ångström Emitter Localization. Dominik Wildanger, Brian R. Patton, Heiko Schill, Luca Marseglia, J. P. Hadden, Sebastian Knauer, Andreas Schönle, John G. Rarity, Jeremy L. O'Brien, Stefan W. Hell, and Jason M. Smith. Adv. Mater. 2012. Oct-19-2012 Daniel
Solvent Effect on Thermally Activated Delayed Fluorescence by 1,2,3,5-Tetrakis(carbazol-9-yl)-4,6-dicyanobenzene. Ryoichi Ishimatsu, Shigeyuki Matsunami, Katsuyuki Shizu, Chihaya Adachi, Koji Nakano, and Toshihiko Imato. J. Phys. Chem. A 2013, 117, 5607-5612. Mar-03-2014 Per
Spatial control of membrane receptor function using ligand nanocalipers. Alan Shaw, Vanessa Lundin, Ekaterina Petrova, Ferenc Förds, Erik Benson, Abdullah Al-Amin, Anna Herland, Andries Blokzijl, Björn Högberg & Ana I Teixeira. Nature methods 2014, doi:10.1038/nmeth.3025. May-20-2016 Lei
Spatially resolved, highly multiplexed RNA profiling in single cells. Kok Hao Chen, Alistair N. Boettiger, Jeffrey R. Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 24 April 2015 Vol 348 Issue 6233, p:6090-1-12. Jan-25-2018 Stefan
Spatially Resolved Scattering Correlation Spectroscopy Using a Total Internal Reflection Configuration. Heng Liu, Chaoqing Dong, Xiangyi Huang, and Jicun Ren. Anal. Chem. 2012, 84, 3561-3567. May-31-2012 Jerker
STED nanoscopy with wavelengths at the emission maximum. Martín D Bordenave, Francisco Balzarotti, Fernando D Stefani, and Stefan W Hell.J. Phys. D: Appl. Phys. 49 (2016) 365102 (8pp). Nov-04-2016 Jan
Spatiotemporal Visualization of Subcellular Dynamics of Carbon Nanotubes. Maged F. Serag, Kevin Braeckmans, Satoshi Habuchi, Noritada Kaji, Alberto Bianco, and Yoshinobu Baba. Nano Lett. 2012, 12, 6145-6151. Feb-14-2013 Jerker
STED with wavelengths closer to the emission maximum. Giuseppe Vicidomini, Gael Moneron, Christian Eggeling, Eva Rittweger, and Stefan W. Hell. OPTICS EXPRESS 27 February 2012 Vol. 20, No. 5 5225-2536. May-24-2012 Daniel
Stochastic Sensing of Single Molecules in a Nanofluidic Electrochemical Device. Marcel A. G. Zevenbergen, Pradyumna S. Singh, Edgar D. Goluch, Bernhard L. Wolfrum, and Serge G. Lemay. Nano Lett. 2011, 11, 2881-2886. Nov-08-2012 Lei
Structural Heterogeneity in the Collision Complex between Organic Dyes and Tryptophan in Aqueous Solution. Qinfang Sun, Rong Lu, and Anchi Yu. J. Phys. Chem. B 2012, 116, 660-666. Feb-22-2012 Thiemo
Substrate-modulated gating dynamics in a Na+-coupled neurotransmitter transporter homologue. Yongfang Zhao, Daniel S. Terry, Lei Shi, Matthias Quick, Harel Weinstein, Scott C. Blanchard & Jonathan A. Javitch. Nature 2011 Vol. 474: 109-14. Dec-08-2011 Stefan
Sucrose Monoester Micelles Size Determined by Fluorescence Correlation Spectroscopy (FCS). Susana A. Sanchez, Enrico Gratton, Antonio L. Zanocco, Else Lemp, German Gunther. PLoS ONE Volume 6 Issue 12 e29278:1-6. Mar-08-2012 Per
Super resolution for common probes and common microscopes. Keith A Lidke. Nature methods vol.9 no.2 February 2012: 139. Feb-09-2012 Jerker
Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes. Sang-Hee Shim, Chenglong Xia, Guisheng Zhong, Hazen P. Babcock, Joshua C. Vaughan, Bo Huang, Xun Wang, Cheng Xu, Guo-Qiang Bi, and Xiaowei Zhuang. PNAS August 28, 2012 vol. 109 no. 35: 13978-13983. Nov-08-2012 Lei
Super-Resolution Imaging of C-Type Lectin and Influenza Hemagglutinin Nanodomains on Plasma Membranes Using Blink Microscopy. Michelle S. Itano, Christian Steinhauer, Jürgen J. Schmied, Carsten Forthmann, Ping Liu, Aaron K. Neumann, Nancy L. Thompson, Philip Tinnefeld, and Ken Jacobson. Biophysical Journal Volume 102 April 2012 1534,1542. May-24-2012 Daniel
Super-resolution imaging prompts re-thinking of cell biology mechanisms: Selected cases using stimulated emission depletion microscopy. Sinem Saka and Silvio O. Rizzoli. Bioessays 34 2012 386-395. May-24-2012 Daniel
Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells. Mudalige S. Gunewardene, Fedor V. Subach, Travis J. Gould, Gregory P. Penoncello, Manasa V. Gudheti, Vladislav V. Verkhusha, and Samuel T. Hess. Biophysical Journal Volume 101 2011 1522-28. Dec-01-2011 Evangelos
Superresolution Microscopy on the Basis of Engineered Dark States. Christian Steinhauer, Carsten Forthmann, Jan Vogelsang, and Philip Tinnefeld. J. Am. Chem. Soc. 2008, 130, 16840-16841. May-24-2012 Daniel
Superresolution Microscopy with Quantum Emitters. Osip Schwartz, Jonathan M. Levitt, Ron Tenne, Stella Itzhakov, Zvicka Deutsch, and Dan Oron. Nano Lett. in press. Nov-29-2013 Lei
Superresolved multiphoton microscopy with spatial frequency-modulated imaging. Jeffrey J. Field, Keith A. Wernsing, Scott R. Domingue, Alyssa M. Allende Motz, Keith F. DeLuca, Dean H. Levi, Jennifer G. DeLuca, Michael D. Young, Jeff A. Squier, and Randy A. Bartels. PNAS June 14, 2016 vol. 113 no. 24 6605-6610. Jun-17-2016 Joachim
Superresolving Dendritic Spines. Leslie M. Loew and Stefan W. Hell. Biophysical Journal Volume 104 February 2013 741-743. Mar-21-2013 Per
Surface Plasmon Resonance Sensors: Science and Technology. Optical Biosensors Technical Group. Webinar 10 October 2018. Mar-21-2019 Maryam
Synthesis, Assembly, and Applications of Hybrid Nanostructures for Biosensing. Shuaidi Zhang, Ren Geryak, Jeffrey Geldmeier, Sunghan Kim, and Vladimir V. Tsukruk. Chem. Rev. 2017, 117, 12942-13038. May-31-2018 Katia
Taking nanoscopy to the limit. Rita Strack. Nature Methods Vol.14 no.3 March 2017, page 221. Mar-10-2017 Joachim
Temperature dependence of protein folding kinetics in living cells. Minghao Guo, Yangfan Xu, and Martin Gruebele. PNAS Early Edition 2012. Jun-14-2012 Per
Tempo-Spatially Resolved Scattering Correlation Spectroscopy under Dark-Field Illumination and Its Application to Investigate Dynamic Behaviors of Gold Nanoparticles in Live Cells. Heng Liu, Chaoqing Dong, and Jicun Ren. J. Am. Chem. Soc. 2014, 136, 2775-2785. Apr-25-2014 Stefan
The development of direct multicolour fluorescence cross-correlation spectroscopy: Towards a new tool for tracking complex biomolecular events in real-time. Holly M. Wobma, Megan L. Blades, Ekaterina Grekova, Dylan L. McGuire, Kun Chen, Warren C. W. Chan and David T. Cramb. Phys. Chem. Chem. Phys., 2012, 14, 3290-3294. Mar-08-2012 Per
The Detection of Nanoscale Membrane Bending with Polarized Localization Microscopy. Abir M. Kabbani and Christopher V. Kelly. Biophysical Journal 113 Oct 2017, 1782-1794. Oct-27-2017 Per
The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis. Ewa Pol. J Visual Exp Gen Elect. March 2010 37, e1746, 1-8. May-23-2013 Stefan
The ribosome uses two active mechanisms to unwind messenger RNA during translation. Xiaohui Qu1, Jin-Der Wen, Laura Lancaster, Harry F. Noller, Carlos Bustamante & Ignacio Tinoco Jr. Nature Vol 475 2011: 118-121. Dec-08-2011 Stefan
The Role of Lipids in VDAC Oligomerization. Viktoria Betaneli, Eugene P. Petrov, and Petra Schwille. Biophysical Journal Volume 102 February 2012 523-531. Mar-08-2012 Per
The Specific Monomer/Dimer Equilibrium of the Corticotropin-releasing Factor Receptor Type 1 Is Established in the Endoplasmic Reticulum. Anke Teichmann, Arthur Gibert, André Lampe, Paul Grzesik, Claudia Rutz, Jens Furkert, Jan Schmoranzer, Gerd Krause, Burkhard Wiesner, and Ralf Schülein. The Journal of Biological Chemistry Vol. 289, NO. 35, pp. 24250-24262. Feb-27-2017 Stefan
The Spectroscopic Basis of Fluorescence Triple Correlation Spectroscopy. William K. Ridgeway, David P. Millar, and James R. Williamson. J. Phys. Chem. B 2012, 116, 1908-1919. Mar-08-2012 Per
Thermodynamic Measurements of Bilayer Insertion of a Single Transmembrane Helix Chaperoned by Fluorinated Surfactants. Alexander Kyrychenko, Mykola V. Rodnin, Yevgen O. Posokhov, Andrea Holt, Bernard Pucci, J. Antoinette Killian and Alexey S. Ladokhin. J. Mol. Biol. (2012) 416, 328-334. Mar-08-2012 Per
Three-Dimensional, Tomographic Super-Resolution Fluorescence Imaging of Serially Sectioned Thick Samples. Siddharth Nanguneri, Benjamin Flottmann, Heinz Horstmann, Mike Heilemann, Thomas Kuner. PLoS ONE, 1 May 2012, Volume 7, Issue 5, e38098. Jun-14-2012 Per
Toward in Vivo Imaging of Heart Disease Using a Radiolabeled Single-Chain Fv Fragment Targeting Tenascin-C. Norihiro Kobayashi, Kenichi Odaka, Tomoya Uehara, Kyoko Imanaka-Yoshida, Yoshinori Kato, Hiroyuki Oyama, Hiroyuki Tadokoro, Hiromichi Akizawa, Shuji Tanada, Michiaki Hiroe, Toshimitsu Fukumura, Issei Komuro, Yasushi Arano, Toshimichi Yoshida, and Toshiaki Irie. Anal. Chem. 2011, 83: 9123-9130. Dec-15-2011 Sofia
Tracking protein aggregation and mislocalization in cells with flow cytometry. Yasmin M Ramdzan, Saskia Polling, Cheryl P Z Chia, Ivan H W Ng, Angelique R Ormsby, Nathan P Croft, Anthony W Purcell, Marie A Bogoyevitch, Dominic C H Ng, Paul A Gleeson & Danny M Hatters. Nature methods 2012 Vol.9 no.5 467-472. May-31-2012 Jerker
Transient Nanoscopic Phase Separation in Biological Lipid Membranes Resolved by Planar Plasmonic Antennas. Pamina M. Winkler, Raju Regmi, Valentin Flauraud, Jürgen Brugger, Hervé Rigneault, Jérome Wenger, and María F. García-Parajo. ACS Nano 2017, 11, 7241-7250. DOI: 10.1021/acsnano.7b03177. Jan-25-2018 Stefan
Tumor cell differentiation by label-free fluorescence microscopy. Petra Weber, Michael Wagner, Petra Kioschis, Waltraud Kessler, and Herbert Schneckenburger. Journal of Biomedical Optics 17(10), 101508 (5 pages October 2012) Jun-21-2012 Lei
Tunable Blinking Kinetics of Cy5 for Precise DNA Quantification and Single-Nucleotide Difference Detection. Hsin-Chih Yeh, Christopher M. Puleo, Yi-Ping Ho, Vasudev J. Bailey, Teck Chuan Lim, Kelvin Liu and Tza-Huei Wang. Biophysical Journal Volume 95 July 2008 729-737. Feb-14-2013 Jerker
Two types of luminescence blinking revealed by spectroelectrochemistry of single quantum dots. Christophe Galland, Yagnaseni Ghosh, Andrea Steinbruck, Milan Sykora, Jennifer A. Hollingsworth, Victor I. Klimov & Han Htoon. Nature 10 November 2011 Vol 479: 203-208. Jan-12-2012 Vova
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Two-Photon Excitation STED Microscopy in Two Colors in Acute Brain Slices. Philipp Bethge, Ronan Chereau, Elena Avignone, Giovanni Marsicano, and U. Valentin Nagerl. Biophysical Journal Volume 104 February 2013 778-785. Mar-21-2013 Per
Two-photon excitation of the fluorescent nucleobase analogues 2-AP and tC. R. S. K. Lane and S. W. Magennis. RSC Advances, 2012, 2, 11397-11403, DOI: 10.1039/c2ra21881j. Jan-10-2013 Stefan
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Ultra-High Resolution 3D Imaging of Whole Cells. Fang Huang, George Sirinakis, Edward S. Allgeyer, Lena K. Schroeder, Whitney C. Duim, Emil B. Kromann, Thomy Phan, Felix E. Rivera-Molina, Jordan R. Myers, Irnov Irnov, Mark Lessard, Yongdeng Zhang, Mary Ann Handel, Christine Jacobs-Wagner, C. Patrick Lusk, James E. Rothman, Derek Toomre, Martin J. Booth, and Joerg Bewersdorf. Cell 166, 1028-1040, August 11, 2016. Nov-04-2016 Jan
Ultralong-Range Polaron-Induced Quenching of Excitons in Isolated Conjugated Polymers. Joshua C. Bolinger, et al. Science Vol. 331 2011: 565-8. Dec-08-2011 Stefan
Visualization of barriers and obstacles to molecular diffusion in live cells by spatial pair-cross-correlation in two dimensions. Leonel Malacrida, Per Niklas Hedde, Suman Ranjit, Francesco Cardarelli, and Enrico Gratton. Biomedical Optics Express 321 Vol. 9, No. 1, 1 Jan 2018. Aug-30-2018 Stefan
Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Alexander Song, Adam S Charles, Sue Ann Koay, Jeff L, Gauthier, Stephan Y Thiberge, Jonathan W Pillow & David W Tank. Nature methods, advance online publication doi:10.1038/nmeth.4226. Mar-20-2017 Per
Whole-Cell, 3D, and Multicolor STED Imaging with Exchangeable Fluorophores. Christoph Spahn, Jonathan B. Grimm, Luke D. Lavis, Marko Lampe, and Mike Heilemann. Nano Lett. 2019, 19, 500-505. DOI: 10.1021/acs.nanolett.8b04385 Apr-11-2019 Chinmaya

List of persons responsible for selecting interesting recent papers to mention (not necessarily present) at the group meetings.

  1. Zhixue Du
  2. Nicklas Bjärnhall Prytz
  3. Maryam Sanaee
  4. Elin Sandberg
  5. Joachim Piguet
  6. Chinmaya Venugopal Srimbickal
  7. Johan Tornmalm
  8. Niusha Bagheri
  9. Alessandro Prencipe
  10. Jan Bergstrand
  11. Per Thyberg
  12. Katia Gallo
  13. Haichun Liu
  14. Xinyan Miao
  15. Amin Baghban
  16. Jerker Widengren
  17. Bariş Demirbay
  18. Stefan Wennmalm

Below is a not complete list over journals where interesting papers might be found. Feel free to add journals to the list.

  • Physics/Chemistry:
    Physical Review Letters, Analytical Chemistry, JACS, J Phys Chem (A-C), Phys Chem Chem Phys, Optics Express
  • Biophysics/Biochemistry/Cell Biology:
    Journal of Cell Biology, EMBO Journal, Molecular Cell, Cell, J Biol Chem, Traffic, Molecular Microbiology, Nucleic Acids Research, Biophysical Journal
  • Other:
    Nature, Science, Nature Nanotechnology, Nature Biotechnology, Nature Methods, Nature Cell Biology, Nature Chemical Biology, Nanoletters, PNAS

UP KTH www.biomolphysics.kth.se - per_at_biomolphysics_dot_kth_dot_se - August 15 2019